Publications - Publications Archive

Hiller NL, Eutsey RA, Powell E, Earl JP, Janto B, Martin DP, Dawid S, Ahmed A, Longwell MJ, Dahlgren ME, Ezzo S, Tettelin H, Daugherty SC, Mitchell TJ, Hillman TA, Buchinsky FJ, Tomasz A, Lencastre H, Sá-Leão R, Post JC, Hu FZ, Ehrlich GD

Differences in genotype and virulence among four multidrug-resistant Streptococcus pneumoniae isolates belonging to the PMEN1 clone, PloS one. 2011-12-19

Reis VO, Silva JC, Souza GT, Semedo P, Buscariollo B, Pereira RL, Cenedeze MA, Pacheco-Silva A, Longo-Maugéri IM, Câmara NO, Keller AC

The polysaccharide fraction of Propionibacterium acnes modulates the development of experimental focal segmental glomerulosclerosis, Immunobiology. 2011-12-16

Ferdinands JM, Denison AM, Dowling NF, Jost HA, Gwinn ML, Liu L, Zaki SR, Shay DK

A pilot study of host genetic variants associated with influenza-associated deaths among children and young adults, Emerging infectious diseases. 2011-12-16

Costa DG, Marvulo MF, Silva JS, Santana SC, Magalhães FJ, Lima Filho CD, Ribeiro VO, Alves LC, Mota RA, Dubey JP, Silva JC

Seroprevalence of Toxoplasma gondii in Domestic and Wild Animals From the Fernando De Noronha, Brazil, The Journal of parasitology. 2011-12-12

Sanchez CJ, Kumar N, Lizcano A, Shivshankar P, Dunning Hotopp JC, Jorgensen JH, Tettelin H, Orihuela CJ

Streptococcus pneumoniae in biofilms are unable to cause invasive disease due to altered virulence determinant production, PloS one. 2011-12-08

Brotman RM

Vaginal microbiome and sexually transmitted infections: an epidemiologic perspective, The Journal of clinical investigation. 2011-12-01

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA

Genomic anatomy of Escherichia coli O157:H7 outbreaks, Proceedings of the National Academy of Sciences of the United States of America. 2011-11-30

Furtado JM, Lansingh VC, Carter MJ, Milanese MF, Peña BN, Ghersi HA, Bote PL, Nano ME, Silva JC

Causes of Blindness and Visual Impairment in Latin America, Survey of ophthalmology. 2011-11-30

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R

Moving pictures of the human microbiome, Genome biology. 2011-11-29

Khoury MJ, Gwinn M, Clyne M, Yu W

Genetic epidemiology with a capital E, ten years after, Genetic epidemiology. 2011-11-29

Casjens SR, Mongodin EF, Qiu WG, Dunn JJ, Luft BJ, Fraser-Liggett CM, Schutzer SE

Whole-genome sequences of two Borrelia afzelii and two Borrelia garinii Lyme disease agent isolates, Journal of bacteriology. 2011-11-29

Donia MS, Fricke WF, Partensky F, Cox J, Elshahawi SI, White JR, Phillippy AM, Schatz MC, Piel J, Haygood MG, Ravel J, Schmidt EW

Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis, Proceedings of the National Academy of Sciences of the United States of America. 2011-11-28

Cantarel BL, Erickson AR, VerBerkmoes NC, Erickson BK, Carey PA, Pan C, Shah M, Mongodin EF, Jansson JK, Fraser-Liggett CM, Hettich RL

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments, PloS one. 2011-11-23

Santos AM, Schechtman D, Cardoso AC, Clemente CF, Silva JC, Fioramonte M, Pereira MB, Marin TM, Oliveira PS, Figueira AC, Oliveira SH, Torriani ÍL, Gozzo FC, Xavier Neto J, Franchini KG

FERM domain interaction with myosin negatively regulates FAK in cardiomyocyte hypertrophy, Nature chemical biology. 2011-11-20

Han A, Zenilman JM, Melendez JH, Shirtliff ME, Agostinho A, James G, Stewart PS, Mongodin EF, Rao D, Rickard AH, Lazarus GS

The importance of a multifaceted approach to characterizing the microbial flora of chronic wounds, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society. 2011-11-18

Khoury MJ, Gwinn M, Bowen MS, Dotson WD

Beyond Base Pairs to Bedside: A Population Perspective on How Genomics Can Improve Health, American journal of public health. 2011-11-17

Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources, Nucleic acids research. 2011-11-12

Schriml LM, Arze C, Nadendla S, Chang YW, Mazaitis M, Felix V, Feng G, Kibbe WA

Disease Ontology: a backbone for disease semantic integration, Nucleic acids research. 2011-11-12

Theunissen TW, Costa Y, Radzisheuskaya A, van Oosten AL, Lavial F, Pain B, Castro LF, Silva JC

Reprogramming capacity of Nanog is functionally conserved in vertebrates and resides in a unique homeodomain, Development (Cambridge, England). 2011-10-26

Angiuoli SV, White JR, Matalka M, White O, Fricke WF

Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing, PloS one. 2011-10-19

Silva JC, Borges JC, Cyr DM, Ramos CH, Torriani IL

Central domain deletions affect the SAXS solution structure and function of yeast Hsp40 proteins Sis1 and Ydj1, BMC structural biology. 2011-10-19

Carter MJ, Limburg H, Lansingh VC, Silva JC, Resnikoff S

Do gender inequities exist in cataract surgical coverage? Meta-analysis in Latin America, Clinical & experimental ophthalmology. 2011-10-17

Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR

Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels, The Journal of biological chemistry. 2011-10-10

Liu Z, Hsiao W, Cantarel BL, Drábek EF, Fraser-Liggett C

Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data, Bioinformatics (Oxford, England). 2011-10-07

Bishop AC, Sun T, Johnson ME, Bruno VM, Patton-Vogt J

Robust utilization of phospholipase-generated metabolites, glycerophosphodiesters, by Candida albicans: role of the CaGit1 permease, Eukaryotic cell. 2011-10-07

Kendall MM, Gruber CC, Rasko DA, Hughes DT, Sperandio V

Hfq virulence regulation in enterohemorrhagic Escherichia coli O157:H7 strain 86-24, Journal of bacteriology. 2011-10-07

Khoury MJ, Gwinn M, Dotson WD, Bowen MS

Is there a need for PGxceptionalism?, Genetics in medicine : official journal of the American College of Medical Genetics. 2011-10-07

Moreno N, Silva JC, Andrade A

Complicated transcatheter closure of postinfarction ventricular acute septal defect, The Journal of invasive cardiology. 2011-10-05

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH

BioCreative III interactive task: an overview, BMC bioinformatics. 2011-10-03

Klimke W, O'Donovan C, White O, Brister JR, Clark K, Fedorov B, Mizrachi I, Pruitt KD, Tatusova T

Solving the Problem: Genome Annotation Standards before the Data Deluge, Standards in genomic sciences. 2011-10-01

Albuquerque PC, Aguiar JL, Santos SM, Pontes Filho N, Mello RJ, Costa ML, Albuquerque CM, Almeida TM, Santos AH, Silva JC

Comparative study of the areas of osteochondral defects produced in the femoral condyles of rabbits treated with gel of sugarcane biopolymer, Acta cirúrgica brasileira / Sociedade Brasileira para Desenvolvimento Pesquisa em Cirurgia. 2011-09-29

Du Y, Derewacz DK, Deguire SM, Teske J, Ravel J, Sulikowski GA, Bachmann BO

Biosynthesis of the Apoptolidins in Nocardiopsis sp. FU 40, Tetrahedron. 2011-09-27

Bessen DE, Kumar N, Hall GS, Riley DR, Luo F, Lizano S, Ford CN, McShan WM, Nguyen SV, Hotopp JC, Tettelin H

Whole-genome association study on tissue tropism phenotypes in group A Streptococcus, Journal of bacteriology. 2011-09-23

Marine R, Polson SW, Ravel J, Hatfull G, Russell D, Sullivan M, Syed F, Dumas M, Wommack KE

Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA, Applied and environmental microbiology. 2011-09-23

Dumas MD, Polson SW, Ritter D, Ravel J, Gelb J, Morgan R, Wommack KE

Impacts of poultry house environment on poultry litter bacterial community composition, PloS one. 2011-09-16

Da Silva JC, Rocha WR

C-H bond activation of methane in aqueous solution: a hybrid quantum mechanical/effective fragment potential study, Journal of computational chemistry. 2011-09-15

Silva GP, Nascimento AL, Michelazzo D, Alves Junior FF, Rocha MG, Silva JC, Reis FJ, Nogueira AA, Poli Neto OB

High prevalence of chronic pelvic pain in women in Ribeirão Preto, Brazil and direct association with abdominal surgery, Clinics (São Paulo, Brazil). 2011-09-14

da Silva LP, da Silva JC

Study on the effects of intermolecular interactions on firefly multicolor bioluminescence, Chemphyschem : a European journal of chemical physics and physical chemistry. 2011-09-14

Vogler AJ, Chan F, Wagner DM, Roumagnac P, Lee J, Nera R, Eppinger M, Ravel J, Rahalison L, Rasoamanana BW, Beckstrom-Sternberg SM, Achtman M, Chanteau S, Keim P

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar, PLoS neglected tropical diseases. 2011-09-13

Haven J, Vargas LC, Mongodin EF, Xue V, Hernandez Y, Pagan P, Fraser-Liggett CM, Schutzer SE, Luft BJ, Casjens SR, Qiu WG

Pervasive recombination and sympatric genome diversification driven by frequency-dependent selection in Borrelia burgdorferi, the Lyme disease bacterium, Genetics. 2011-09-02

Angiuoli SV, Matalka M, Gussman A, Galens K, Vangala M, Riley DR, Arze C, White JR, White O, Fricke WF

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing, BMC bioinformatics. 2011-08-30

Bispo CG, Tortamano IP, Rocha RG, Francischone CE, Borsatti MA, da Silva JC, Medeiros AC

Cardiovascular responses to different stages of restorative dental treatment unaffected by local anaesthetic type, Australian dental journal. 2011-08-11

Gwinn MR, DeVoney D, Jarabek AM, Sonawane B, Wheeler J, Weissman DN, Masten S, Thompson C

Meeting report: mode(s) of action of asbestos and related mineral fibers, Environmental health perspectives. 2011-08-01

Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany, The New England journal of medicine. 2011-07-27

Munro JB, Silva JC

Ribonucleotide reductase as a target to control apicomplexan diseases, Current issues in molecular biology. 2011-07-26

Barata RA, Silva JC, Silva JC, Almeida SN, Teixeira Lde A, Dias ES

[Control of visceral leishmaniasis in the town of Porteirinha, state of Minas Gerais, Brazil, from 1998 to 2003], Revista da Sociedade Brasileira de Medicina Tropical. 2011-07-22

Silva JC, Gasparetto EL, André C

Cognitive and neuroimaging profile of a Brazilian family with CADASIL, Arquivos de neuro-psiquiatria. 2011-07-14

Yang Q, Liu T, Kuklina EV, Flanders WD, Hong Y, Gillespie C, Chang MH, Gwinn M, Dowling N, Khoury MJ, Hu FB

Sodium and potassium intake and mortality among US adults: prospective data from the Third National Health and Nutrition Examination Survey, Archives of internal medicine. 2011-07-12

Zan J, Fricke WF, Fuqua C, Ravel J, Hill RT

Genome sequence of Ruegeria sp. strain KLH11, an N-acylhomoserine lactone-producing bacterium isolated from the marine sponge Mycale laxissima, Journal of bacteriology. 2011-07-08

Rivarola M, Foster JT, Chan AP, Williams AL, Rice DW, Liu X, Melake-Berhan A, Huot Creasy H, Puiu D, Rosovitz MJ, Khouri HM, Beckstrom-Sternberg SM, Allan GJ, Keim P, Ravel J, Rabinowicz PD

Castor bean organelle genome sequencing and worldwide genetic diversity analysis, PloS one. 2011-07-07

Winthrop KL, Furtado JM, Silva JC, Resnikoff S, Lansingh VC

River blindness: an old disease on the brink of elimination and control, Journal of global infectious diseases. 2011-07-06

Lebreiro AM, Silva JC

Transcatheter closure of an iatrogenic aorto-right ventricular fistula, Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions. 2011-07-06

Theunissen TW, Silva JC

Switching on pluripotency: a perspective on the biological requirement of Nanog, Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2011-07-05

de Moraes EP, da Costa MM, Dantas AF, da Silva JC, Mota RA

Toxoplasma gondii diagnosis in ovine aborted fetuses and stillborns in the State of Pernambuco, Brazil, Veterinary parasitology. 2011-06-30

Angiuoli SV, Dunning Hotopp JC, Salzberg SL, Tettelin H

Improving pan-genome annotation using whole genome multiple alignment, BMC bioinformatics. 2011-06-30

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications, Nature biotechnology. 2011-06-27

Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319, Journal of bacteriology. 2011-06-24

Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P, Garrity GM, Gilbert J, Glöckner FO, Hirschman L, Karsch-Mizrachi I, Klenk HP, Knight R, Kottmann R, Kyrpides N, Meyer F, San Gil I, Sansone SA, Schriml LM, Sterk P, Tatusova T, Ussery DW, White O, Wooley J

The Genomic Standards Consortium, PLoS biology. 2011-06-21

Collingro A, Tischler P, Weinmaier T, Penz T, Heinz E, Brunham RC, Read TD, Bavoil PM, Sachse K, Kahane S, Friedman MG, Rattei T, Myers GS, Horn M

Unity in variety--the pan-genome of the Chlamydiae, Molecular biology and evolution. 2011-06-20

Santos PS, Albuquerque GR, da Silva VM, Martin AR, Marvulo MF, Souza SL, Ragozo AM, Nascimento CC, Gennari SM, Dubey JP, Silva JC

Seroprevalence of Toxoplasma gondii in free-living Amazon River dolphins (Inia geoffrensis) from central Amazon, Brazil, Veterinary parasitology. 2011-06-12

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of genetic risk prediction studies (GRIPS): explanation and elaboration, European journal of human genetics : EJHG. 2011-06-09

Sahl JW, Johnson JK, Harris AD, Phillippy AM, Hsiao WW, Thom KA, Rasko DA

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity, BMC genomics. 2011-06-04

Da Silva LP, Da Silva JC

Theoretical modulation of the color of light emitted by firefly oxyluciferin, Journal of computational chemistry. 2011-06-02

Henderson T, Georgiou-Karistianis N, White O, Millist L, Williams DR, Churchyard A, Fielding J

Inhibitory control during smooth pursuit in Parkinson's disease and Huntington's disease, Movement disorders : official journal of the Movement Disorder Society. 2011-05-31

Grinblat-Huse V, Drabek EF, Creasy HH, Daugherty SC, Jones KM, Santana-Cruz I, Tallon LJ, Read TD, Hatch TP, Bavoil P, Myers GS

Genome sequences of the zoonotic pathogens Chlamydia psittaci 6BC and Cal10, Journal of bacteriology. 2011-05-27

Yu W, Yesupriya A, Wulf A, Hindorff LA, Dowling N, Khoury MJ, Gwinn M

GWAS Integrator: a bioinformatics tool to explore human genetic associations reported in published genome-wide association studies, European journal of human genetics : EJHG. 2011-05-25

Leitão JM, Tauler R, da Silva JC

Chemometric analysis of excitation emission matrices of fluorescent nanocomposites, Journal of fluorescence. 2011-05-24

Fricke WF, Mammel MK, McDermott PF, Tartera C, White DG, Leclerc JE, Ravel J, Cebula TA

Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution, Journal of bacteriology. 2011-05-20

Mojica S, Huot Creasy H, Daugherty S, Read TD, Kim T, Kaltenboeck B, Bavoil P, Myers GS

Genome sequence of the obligate intracellular animal pathogen Chlamydia pecorum E58, Journal of bacteriology. 2011-05-13

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of genetic risk prediction studies (GRIPS): explanation and elaboration, European journal of epidemiology. 2011-05-06

Vidal CH, Silva JC, Souza JJ, Bernardino SP, Ferreira ML

Radicular dysfunction preponderance at early phase clinical evaluation in myelitis by Schistosoma mansoni, Arquivos de neuro-psiquiatria. 2011-05-03

Fortes BC, Dotta G, Copês RM, Valentini R, Silva JC, Monticielo OA

Pachydermoperiostosis associated with gastric neoplasia, Revista da Associação Médica Brasileira (1992). 2011-05-03

Gwinn MR

Multiple modes of action of asbestos and related mineral fibers, Journal of toxicology and environmental health. Part B, Critical reviews. 2011-05-02

Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kües U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, Quesneville H, Rouhier N, Sakthikumar S, Salamov AA, Schmutz J, Selles B, Shapiro H, Tanguay P, Tuskan GA, Henrissat B, Van de Peer Y, Rouzé P, Ellis JG, Dodds PN, Schein JE, Zhong S, Hamelin RC, Grigoriev IV, Szabo LJ, Martin F

Obligate biotrophy features unraveled by the genomic analysis of rust fungi, Proceedings of the National Academy of Sciences of the United States of America. 2011-05-02

Pelle R, Graham SP, Njahira MN, Osaso J, Saya RM, Odongo DO, Toye PG, Spooner PR, Musoke AJ, Mwangi DM, Taracha EL, Morrison WI, Weir W, Silva JC, Bishop RP

Two Theileria parva CD8 T cell antigen genes are more variable in buffalo than cattle parasites, but differ in pattern of sequence diversity, PloS one. 2011-04-29

Galens K, Orvis J, Daugherty S, Creasy HH, Angiuoli S, White O, Wortman J, Mahurkar A, Giglio MG

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation, Standards in genomic sciences. 2011-04-25

Brotman RM, Melendez JH, Ghanem KG

A case control study of anovaginal distance and bacterial vaginosis, International journal of STD & AIDS. 2011-04-25

Jiménez-Jiménez J, Algarra M, Rodríguez-Castellón E, Jiménez-López A, da Silva JC

Hybrid porous phosphate heterostructures as adsorbents of Hg(II) and Ni(II) from industrial sewage, Journal of hazardous materials. 2011-04-07

Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, Okstad OA, Kolstø AB, Fleischmann RD, Peterson SN

Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence, Genomics. 2011-04-05

Lee AW, Tettelin H, Chancey S

Genomic Analyses of Clonal Isolates Provide Clues to the Evolution of Streptococcus pneumoniae, Frontiers in microbiology. 2011-04-04

Mills RE, Pittard WS, Mullaney JM, Farooq U, Creasy TH, Mahurkar AA, Kemeza DM, Strassler DS, Ponting CP, Webber C, Devine SE

Natural genetic variation caused by small insertions and deletions in the human genome, Genome research. 2011-04-01

Zhang Y, Gonçalves H, da Silva JC, Geddes CD

Metal-enhanced photoluminescence from carbon nanodots, Chemical communications (Cambridge, England). 2011-04-01

Brave SR, Ratcliffe K, Wilson Z, James NH, Ashton S, Wainwright A, Kendrew J, Dudley P, Broadbent N, Sproat G, Taylor S, Barnes C, Silva JC, Farnsworth CL, Hennequin L, Ogilvie DJ, Jürgensmeier JM, Shibuya M, Wedge SR, Barry ST

Assessing the activity of cediranib, a VEGFR-2/3 tyrosine kinase inhibitor, against VEGFR-1 and members of the structurally related PDGFR family, Molecular cancer therapeutics. 2011-03-25

Donia MS, Fricke WF, Ravel J, Schmidt EW

Variation in tropical reef symbiont metagenomes defined by secondary metabolism, PloS one. 2011-03-22

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA

Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir, Applied and environmental microbiology. 2011-03-18

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of Genetic RIsk Prediction Studies (GRIPS): explanation and elaboration, Journal of clinical epidemiology. 2011-03-16

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of genetic risk prediction studies (GRIPS): explanation and elaboration, European journal of clinical investigation. 2011-03-15

da Silva LP, da Silva JC

Kinetics of inhibition of firefly luciferase by dehydroluciferyl-coenzyme A, dehydroluciferin and L-luciferin, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology. 2011-03-15

Atreya C, Nakhasi H, Mied P, Epstein J, Hughes J, Gwinn M, Kleinman S, Dodd R, Stramer S, Walderhaug M, Ganz P, Goodrich R, Tibbetts C, Asher D

FDA workshop on emerging infectious diseases: evaluating emerging infectious diseases (EIDs) for transfusion safety, Transfusion. 2011-03-10

Lopes R, Almeida PB, Amorim MJ, Magalhães D, Silva JC, Pinho P, Maciel MJ

Anomalous origin of the left coronary artery from the pulmonary artery in an asymptomatic adult, Congenital heart disease. 2011-03-10

Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, Langham RJ, Decker RS, Jiang L, Read TD, Phillippy AM, Salzberg SL, Pop M, Van Ert MN, Kenefic LJ, Keim PS, Fraser-Liggett CM, Ravel J

Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation, Proceedings of the National Academy of Sciences of the United States of America. 2011-03-07

Silva MR, Pedrosa VB, Silva JC, Eler JP, Guimarães JD, Albuquerque LG

Testicular traits as selection criteria for young Nellore bulls, Journal of animal science. 2011-03-07

Budroni S, Siena E, Dunning Hotopp JC, Seib KL, Serruto D, Nofroni C, Comanducci M, Riley DR, Daugherty SC, Angiuoli SV, Covacci A, Pizza M, Rappuoli R, Moxon ER, Tettelin H, Medini D

Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination, Proceedings of the National Academy of Sciences of the United States of America. 2011-02-28

Silva JC, Furtado LF, Ferro TC, Bezerra Kde C, Borges EP, Melo AC

[Parasitism due to Ascaris lumbricoides and its epidemiological characteristics among children in the State of Maranhão], Revista da Sociedade Brasileira de Medicina Tropical. 2011-02-22

Dunning Hotopp JC

Horizontal gene transfer between bacteria and animals, Trends in genetics : TIG. 2011-02-18

Schneider MC, Aguilera XP, Barbosa da Silva Junior J, Ault SK, Najera P, Martinez J, Requejo R, Nicholls RS, Yadon Z, Silva JC, Leanes LF, Periago MR

Elimination of neglected diseases in latin america and the Caribbean: a mapping of selected diseases, PLoS neglected tropical diseases. 2011-02-15

Stanley-Cary C, Rinehart N, Tonge B, White O, Fielding J

Greater disruption to control of voluntary saccades in autistic disorder than Asperger's disorder: evidence for greater cerebellar involvement in autism?, Cerebellum (London, England). 2011-02-14

Meirelles GV, Silva JC, Mendonça Yde A, Ramos CH, Torriani IL, Kobarg J

Human Nek6 is a monomeric mostly globular kinase with an unfolded short N-terminal domain, BMC structural biology. 2011-02-14

Gwinn M, Grossniklaus DA, Yu W, Melillo S, Wulf A, Flome J, Dotson WD, Khoury MJ

Horizon scanning for new genomic tests, Genetics in medicine : official journal of the American College of Medical Genetics. 2011-02-04

Sahl JW, Lloyd AL, Redman JC, Cebula TA, Wood DP, Mobley HL, Rasko DA

Genomic characterization of asymptomatic Escherichia coli isolated from the neobladder, Microbiology (Reading, England). 2011-01-20

Gwinn MR, Johns DO, Bateson TF, Guyton KZ

A review of the genotoxicity of 1,2-dichloroethane (EDC), Mutation research. 2011-01-19

Casjens SR, Fraser-Liggett CM, Mongodin EF, Qiu WG, Dunn JJ, Luft BJ, Schutzer SE

Whole genome sequence of an unusual Borrelia burgdorferi sensu lato isolate, Journal of bacteriology. 2011-01-07

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C,

Towards BioDBcore: a community-defined information specification for biological databases, Database : the journal of biological databases and curation. 2011-01-04