Publications - Publications 2020

Breazeale S, Dorsey SG, Kearney J, Conley S, Jeon S, Yoo B, Redeker NS

Symptom cluster profiles following traumatic orthopedic injuries: A protocol, Research in nursing & health. 2020 Dec 25

Akula D, O'Connor TR, Anindya R

Oxidative demethylase ALKBH5 repairs DNA alkylation damage and protects against alkylation-induced toxicity, Biochemical and biophysical research communications. 2020 Dec 13

O'Connor TE, Fabiano AJ, Prasad D, Morin N, Fenstermaker RA

Lateral Temporal Approach for Image-Guided Stereotactic Biopsy of Pineal Region Tumors, World neurosurgery. 2020 Dec 09

Porubsky D, Ebert P, Audano PA, Vollger MR, Harvey WT, Marijon P, Ebler J, Munson KM, Sorensen M, Sulovari A, Haukness M, Ghareghani M, , Lansdorp PM, Paten B, Devine SE, Sanders AD, Lee C, Chaisson MJP, Korbel JO, Eichler EE, Marschall T

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads, Nature biotechnology. 2020 Dec 07

Chu Y, Xiao Z, Jing N, Yan W, Wang S, Ma B, Zhang J, Li Y

Arborinine, a potential LSD1 inhibitor, inhibits epithelial-mesenchymal transition of SGC-7901 cells and adriamycin-resistant gastric cancer SGC-7901/ADR cells, Investigational new drugs. 2020 Nov 19

Rathbun AM, England BR, Mikuls TR, Ryan AS, Barton JL, Shardell MD, Hochberg MC

Relationship Between Depression and Disease Activity in United States Veterans With Early Rheumatoid Arthritis Receiving Methotrexate, The Journal of rheumatology. 2020 Nov 15

Sarihan EI, Pérez-Palma E, Niestroj LM, Loesch D, Inca-Martinez M, Horimoto ARVR, Cornejo-Olivas M, Torres L, Mazzetti P, Cosentino C, Sarapura-Castro E, Rivera-Valdivia A, Dieguez E, Raggio V, Lescano A, Tumas V, Borges V, Ferraz HB, Rieder CR, Schumacher-Schuh AF, Santos-Lobato BL, Velez-Pardo C, Jimenez-Del-Rio M, Lopera F, Moreno S, Chana-Cuevas P, Fernandez W, Arboleda G, Arboleda H, Arboleda-Bustos CE, Yearout D, Zabetian CP, Thornton TA, O'Connor TD, Lal D, Mata IF,

Genome-Wide Analysis of Copy Number Variation in Latin American Parkinson's Disease Patients, Movement disorders : official journal of the Movement Disorder Society. 2020 Nov 05

Iva P, Fielding J, Clough M, White O, Noffs G, Godic B, Martin R, van der Walt A, Rajan R

Speech discrimination impairments as a marker of disease severity in multiple sclerosis, Multiple sclerosis and related disorders. 2020 Nov 01

Ravel J, Moreno I, Simón C

Bacterial vaginosis and its association with infertility, endometritis, and pelvic inflammatory disease, American journal of obstetrics and gynecology. 2020 Oct 19

O'Connor TE, O'Hehir MM, Khan A, Mao JZ, Levy LC, Mullin JP, Pollina J

Mazor X Stealth Robotic Technology: A Technical Note, World neurosurgery. 2020 Oct 12

Gerson KD, Mccarthy C, Ravel J, Elovitz MA, Burris HH

Effect of a Nonoptimal Cervicovaginal Microbiota and Psychosocial Stress on Recurrent Spontaneous Preterm Birth, American journal of perinatology. 2020 Oct 08

Holm J, Yu NY, Johansson A, Ploner A, Hall P, Lindström LS, Czene K

Concordance of Immunohistochemistry-Based and Gene Expression-Based Subtyping in Breast Cancer, JNCI cancer spectrum. 2020 Oct 07

Florova V, Romero R, Tarca AL, Galaz J, Motomura K, Ahmad MM, Hsu CD, Hsu R, Tong A, Ravel J, Theis KR, Gomez-Lopez N

Vaginal host immune-microbiome interactions in a cohort of primarily African-American women who ultimately underwent spontaneous preterm birth or delivered at term, Cytokine. 2020 Oct 07

Sheng L, Zhang Z, Zhang Y, Wang E, Ma B, Xu Q, Ma L, Zhang M, Pei G, Chang J

A novel "hot spring"-mimetic hydrogel with excellent angiogenic properties for chronic wound healing, Biomaterials. 2020 Sep 19

Mao JZ, Fritz AG, Lucas JP, Khan A, Popoola DO, Becker AB, Adetunji A, Levy BR, Agyei JO, O'Connor TE, Pollina J, Mullin JP

Assessment of Rod Material Types in Spine Surgery Outcomes: A Systematic Review, World neurosurgery. 2020 Sep 18

Hertzano R, Gwilliam K, Rose K, Milon B, Matern MS

Cell Type-Specific Expression Analysis of the Inner Ear: A Technical Report, The Laryngoscope. 2020 Jun 24

Engeln M, Song Y, Chandra R, La A, Fox ME, Evans B, Turner MD, Thomas S, Francis TC, Hertzano R, Lobo MK

Individual differences in stereotypy and neuron subtype translatome with TrkB deletion, Molecular psychiatry. 2020 May 04

Ma B, France MT, Crabtree J, Holm JB, Humphrys MS, Brotman RM, Ravel J

A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina, Nature communications. 2020 Feb 26

Borgogna JC, Shardell MD, Yeoman CJ, Ghanem KG, Kadriu H, Ulanov AV, Gaydos CA, Hardick J, Robinson CK, Bavoil PM, Ravel J, Brotman RM, Tuddenham S

The association of Chlamydia trachomatis and Mycoplasma genitalium infection with the vaginal metabolome, Scientific reports. 2020 Feb 25

Baumbauer KM, Ramesh D, Perry M, Carney KB, Julian T, Glidden N, Dorsey SG, Starkweather AR, Young EE

Contribution of COMT and BDNF Genotype and Expression to the Risk of Transition from Acute to Chronic Low Back Pain, The Clinical journal of pain. 2020 Feb 19

Mekonnen SA, Merenstein D, Fraser CM, Marco ML

Molecular mechanisms of probiotic prevention of antibiotic-associated diarrhea, Current opinion in biotechnology. 2020 Feb 19

Maynard TM, Horvath A, Bernout J, Karpinski BA, Tavares ALP, Shah A, Zheng Q, Spurr L, Olender J, Moody SA, Fraser CM, LaMantia AS, Lee NH

Transcriptional dysregulation in developing trigeminal sensory neurons in the LgDel mouse model of DiGeorge 22q11.2 Deletion Syndrome, Human molecular genetics. 2020 Feb 12

Shardell M, Parimi N, Langsetmo L, Tanaka T, Jiang L, Orwoll E, Shikany JM, Kado DM, Cawthon PM,

Comparing Analytical Methods for the Gut Microbiome and Aging: Gut Microbial Communities and Body Weight in the Osteoporotic Fractures in Men (MrOS) Study, The journals of gerontology. Series A, Biological sciences and medical sciences. 2020 Feb 06

Tondnevis F, Dudenhausen EE, Miller AM, McKenna R, Altschul SF, Bloom LB, Neuwald AF

Deep Analysis of Residue Constraints (DARC): identifying determinants of protein functional specificity, Scientific reports. 2020 Feb 03

Dang W, Ma B, Li B, Huan Z, Ma N, Zhu H, Chang J, Xiao Y, Wu C

3D printing of metal-organic framework nanosheets-structured scaffolds with tumor therapy and bone construction, Biofabrication. 2020 Jan 31

Toshchakov VY, Neuwald AF

A survey of TIR domain sequence and structure divergence, Immunogenetics. 2020 Jan 30

Ding Y, Dong F, Zhao J, Peng W, Chen Q, Ma B

Non-Point Source Pollution Simulation and Best Management Practices Analysis Based on Control Units in Northern China, International journal of environmental research and public health. 2020 Jan 30

Shivakoti R, Tuddenham S, Caulfield LE, Murphy C, Robinson C, Ravel J, Ghanem KG, Brotman RM

Dietary macronutrient intake and molecular-bacterial vaginosis: Role of fiber, Clinical nutrition (Edinburgh, Scotland). 2020 Jan 29

Brooks PM, Rose KP, MacRae ML, Rangoussis KM, Gurjar M, Hertzano R, Coate TM

Pou3f4-expressing otic mesenchyme cells promote spiral ganglion neuron survival in the postnatal mouse cochlea, The Journal of comparative neurology. 2020 Jan 29

Feng C, Ma B, Xu M, Zhai D, Liu Y, Xue J, Chang J, Wu C

Three-Dimensional Printing of Scaffolds with Synergistic Effects of Micro-Nano Surfaces and Hollow Channels for Bone Regeneration, ACS biomaterials science & engineering. 2020 Jan 24

Kessler MD, Loesch DP, Perry JA, Heard-Costa NL, Taliun D, Cade BE, Wang H, Daya M, Ziniti J, Datta S, Celedón JC, Soto-Quiros ME, Avila L, Weiss ST, Barnes K, Redline SS, Vasan RS, Johnson AD, Mathias RA, Hernandez R, Wilson JG, Nickerson DA, Abecasis G, Browning SR, Zöllner S, O'Connell JR, Mitchell BD, , , O'Connor TD

De novo mutations across 1,465 diverse genomes reveal mutational insights and reductions in the Amish founder population, Proceedings of the National Academy of Sciences of the United States of America. 2020 Jan 21

Griffioen MA, Glutting J, O'Toole RV, Starkweather AR, Lyon D, Dorsey SG, Renn CL

Transition from Acute to Chronic Pain in Lower Extremity Fracture Patients: A Pain Phenotyping Protocol, Nursing research. 2020 Jan 17

Haspel JA, Anafi R, Brown MK, Cermakian N, Depner C, Desplats P, Gelman AE, Haack M, Jelic S, Kim BS, Laposky AD, Lee YC, Mongodin E, Prather AA, Prendergast BJ, Reardon C, Shaw AC, Sengupta S, Szentirmai É, Thakkar M, Walker WE, Solt LA

Perfect timing: circadian rhythms, sleep, and immunity - an NIH workshop summary, JCI insight. 2020 Jan 16

Li T, Ma B, Xue J, Zhai D, Zhao P, Chang J, Wu C

Bioinspired Biomaterials with a Brick-and-Mortar Microstructure Combining Mechanical and Biological Performance, Advanced healthcare materials. 2020 Jan 15

Lei K, Ma B, Shi P, Jin C, Ling T, Li L, He X, Wang L

Icariin Mitigates the Growth and Invasion Ability of Human Oral Squamous Cell Carcinoma via Inhibiting Toll-Like Receptor 4 and Phosphorylation of NF-κB P65, OncoTargets and therapy. 2020 Jan 10

Terry DM, Devine SE

Aberrantly High Levels of Somatic LINE-1 Expression and Retrotransposition in Human Neurological Disorders, Frontiers in genetics. 2020 Jan 08

Moser KA, Drábek EF, Dwivedi A, Stucke EM, Crabtree J, Dara A, Shah Z, Adams M, Li T, Rodrigues PT, Koren S, Phillippy AM, Munro JB, Ouattara A, Sparklin BC, Dunning Hotopp JC, Lyke KE, Sadzewicz L, Tallon LJ, Spring MD, Jongsakul K, Lon C, Saunders DL, Ferreira MU, Nyunt MM, Laufer MK, Travassos MA, Sauerwein RW, Takala-Harrison S, Fraser CM, Sim BKL, Hoffman SL, Plowe CV, Silva JC

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential, Genome medicine. 2020 Jan 08