Publications - Publications 2024

Ma B, Duan L, Ma Y, Bu F, Lan K, Zhao T, Chen L, Zu L, Peng L, Zhao Z, Xu J, Zhong S, Aldhayan DM, Al-Enizi AM, Elzatahry A, Li W, Yang W, Zhao D

Implanting colloidal nanoparticles into single-crystalline zeolites for Catalytic Dehydration, Angewandte Chemie (International ed. in English). 2024 Apr 05

León Y, Honigsberg R, Rasko DA, Faherty CS

Gastrointestinal signals in supplemented media reveal a role in adherence for the autotransporter gene, Gut microbes. 2024 Mar 28

Mauck C, Thurman A, Jensen JT, Schreiber CA, Baker J, Hou MY, Chavoustie S, Dart C, Wu H, Ravel J, Gajer P, Herold BC, Jacot T, Zack N, Hatheway J, Friend D

Safety Testing of Ovaprene: an Investigational Non-Hormonal Monthly Vaginal Contraceptive, Contraception. 2024 Mar 27

Shang J, Coe KJ, Lim HK, Chen L, Khatri BB, Salter R, Mitra K, Iyer R

Application of Covalent Binding Body Burden in the HμREL Human Hepatocyte Coculture Model for Reactivity Risk Assessment of Metabolically Low Turnover Drugs, Chemical research in toxicology. 2024 Mar 26

Jabra-Rizk MA, Wang T, Sofras D, Montelongo-Jauregui D, Paiva T, Carolus H, Dufrene Y, Alfaifi A, McCracken C, Bruno V, Dijck PV

Functional Redundancy in Candida auris Cell Surface Adhesins Crucial for Cell-Cell Interaction and Aggregation, Research square. 2024 Mar 22

Wang TW, Sofras D, Montelongo-Jauregui D, Paiva TO, Carolus H, Dufrêne YF, Alfaifi AA, McCracken C, Bruno VM, Van Dijck P, Jabra-Rizk MA

Functional Redundancy in Cell Surface Adhesins Crucial for Cell-Cell Interaction and Aggregation, bioRxiv : the preprint server for biology. 2024 Mar 21

Ma G, Zhu X, Ma B, Lassleben H

Employee Proactive Personality and Career Growth: The Role of Proactive Behavior and Leader Proactive Personality, Behavioral sciences (Basel, Switzerland). 2024 Mar 21

Gong Y, Xia Y, Su Z, Wang X, Kou Y, Ma B, Hou Y, Shi Z

A C-Type Lectin, RfCTL27, Activates the Immune Defense in the Red Palm Weevil (A.G. Olivier, 1791) (Coleoptera: Curculionidae: Dryophthorinae) by the Recognition of Gram-Negative Bacteria, Insects. 2024 Mar 21

Joseph A, Anton L, Guan Y, Ferguson B, Mirro I, Meng N, France M, Ravel J, Elovitz MA

Extracellular vesicles from vaginal Gardnerella vaginalis and Mobiluncus mulieris contain distinct proteomic cargo and induce inflammatory pathways, NPJ biofilms and microbiomes. 2024 Mar 21

Chen J, Zhao T, Li H, Xu W, Maas K, Singh V, Chen MH, Dorsey SG, Starkweather AR, Cong XS

Multi-Omics Analysis of Gut Microbiota and Host Transcriptomics Reveal Dysregulated Immune Response and Metabolism in Young Adults with Irritable Bowel Syndrome, International journal of molecular sciences. 2024 Mar 20

Guo B, Borda V, Laboulaye R, Spring MD, Wojnarski M, Vesely BA, Silva JC, Waters NC, O'Connor TD, Takala-Harrison S

Strong positive selection biases identity-by-descent-based inferences of recent demography and population structure in Plasmodium falciparum, Nature communications. 2024 Mar 20

Hoffmann DE, von Rosenvinge EC, Roghmann MC, Palumbo FB, McDonald D, Ravel J

The DTC microbiome testing industry needs more regulation, Science (New York, N.Y.). 2024 Mar 14

Bernat N, Campbell R, Nam H, Basu M, Odesser T, Elyasaf G, Engeln M, Chandra R, Golden S, Ament S, Lobo MK, Kupchik YM

Multimodal interrogation of ventral pallidum projections reveals projection-specific signatures and effects on cocaine reward, The Journal of neuroscience : the official journal of the Society for Neuroscience. 2024 Mar 14

Rolandelli A, Laukaitis-Yousey HJ, Bogale HN, Singh N, Samaddar S, O'Neal AJ, Ferraz CR, Butnaru M, Mameli E, Xia B, Mendes MT, Butler LR, Marnin L, Cabrera Paz FE, Valencia LM, Rana VS, Skerry C, Pal U, Mohr SE, Perrimon N, Serre D, Pedra JHF

Tick hemocytes have a pleiotropic role in microbial infection and arthropod fitness, Nature communications. 2024 Mar 08

Tebben K, Yirampo S, Coulibaly D, Koné AK, Laurens MB, Stucke EM, Dembélé A, Tolo Y, Traoré K, Niangaly A, Berry AA, Kouriba B, Plowe CV, Doumbo OK, Lyke KE, Takala-Harrison S, Thera MA, Travassos MA, Serre D

Gene expression analyses reveal differences in children's response to malaria according to their age, Nature communications. 2024 Mar 06

Guo T, Zamuner F, Ting S, Chen L, Rooper L, Tamayo P, Fakhry C, Gaykalova D, Mehra R

Clinical and genomic characterization of chemoradiation-resistant HPV-positive oropharyngeal squamous cell carcinoma, Frontiers in oncology. 2024 Mar 05

Patel JN, Jiang C, Owzar K, Hertz DL, Wang J, Mulkey FA, Kelly WK, Halabi S, Furukawa Y, Lassiter C, Dorsey SG, Friedman PN, Small EJ, Carducci MA, Kelley MJ, Nakamura Y, Kubo M, Ratain MJ, Morris MJ, McLeod HL

Pharmacogenetic and clinical risk factors for bevacizumab-related gastrointestinal hemorrhage in prostate cancer patients treated on CALGB 90401 (Alliance), The pharmacogenomics journal. 2024 Mar 04

Ponciano JM, Gómez JP, Ravel J, Forney LJ

Inferring stability and persistence in the vaginal microbiome: A stochastic model of ecological dynamics, bioRxiv : the preprint server for biology. 2024 Mar 03

Sonthalia S, Li G, Blanco XM, Casella A, Liu J, Stein-O'Brien G, Caffo B, Adkins RS, Orvis J, Hertzano R, Mahurkar A, Gillis J, Werner J, Ma S, Micali N, Sestan N, Rakic P, Santpere G, Ament SA, Colantuoni C

transcriptome dissection of neocortical excitatory neurogenesis via joint matrix decomposition and transfer learning, bioRxiv : the preprint server for biology. 2024 Feb 28

O'Connor T, Ferguson A, Clegg BW, Pallett N, Midgley JJ, Shimbani J

Emergent trees in woodland: influence of elephant density on persistence attrition, PeerJ. 2024 Feb 26

Castellano CA, Sun T, Ravindranathan D, Hwang C, Balanchivadze N, Singh SRK, Griffiths EA, Puzanov I, Ruiz-Garcia E, Vilar-Compte D, Cárdenas-Delgado AI, McKay RR, Nonato TK, Ajmera A, Yu PP, Nadkarni R, O'Connor TE, Berg S, Ma K, Farmakiotis D, Vieira K, Arvanitis P, Saliby RM, Labaki C, El Zarif T, Wise-Draper TM, Zamulko O, Li N, Bodin BE, Accordino MK, Ingham M, Joshi M, Polimera HV, Fecher LA, Friese CR, Yoon JJ, Mavromatis BH, Brown JT, Russell K, Nanchal R, Singh H, Tachiki L, Moria FA, Nagaraj G, Cortez K, Abbasi SH, Wulff-Burchfield EM, Puc M, Weissmann LB, Bhatt PS, Mariano MG, Mishra S, Halabi S, Beeghly A, Warner JL, French B, Bilen MA,

The impact of cancer metastases on COVID-19 outcomes: A COVID-19 and Cancer Consortium registry-based retrospective cohort study, Cancer. 2024 Feb 20

Alizadeh M, Wong U, Siaton BC, Patil SA, George L, Raufman JP, Scott WH, von Rosenvinge EC, Ravel J, Cross RK

ExpLOring the role of the intestinal MiCrobiome in InflammATory bowel disease-AssocIated SpONdylarthritis (LOCATION-IBD), Heliyon. 2024 Feb 18

Carter KA, France MT, Rutt L, Bilski L, Martinez-Greiwe S, Regan M, Brotman RM, Ravel J

Sexual transmission of urogenital bacteria: whole metagenome sequencing evidence from a sexual network study, mSphere. 2024 Feb 15

Cantin LJ, Dunning Hotopp JC, Foster JM

Improved metagenome assemblies through selective enrichment of bacterial genomic DNA from eukaryotic host genomic DNA using ATAC-seq, Frontiers in microbiology. 2024 Feb 15

Hazzard B, Sá J, Bogale H, Pascini T, Ellis A, Amin S, Armistead J, Adams J, Wellems T, Serre D

Single-cell analyses of polyclonal Plasmodium vivax infections and their consequences on parasite transmission, Research square. 2024 Feb 13

Kucera CW, Chappell NP, Tian C, Richardson MT, Tarney CM, Hamilton CA, Chan JK, Kapp DS, Leath CA, Casablanca Y, Rojas C, Sitler CA, Wenzel L, Klopp A, Jones NL, Rocconi RP, Farley JH, O'Connor TD, Shriver CD, Bateman NW, Conrads TP, Phippen NT, Maxwell GL, Darcy KM

Survival disparities in non-Hispanic Black and White cervical cancer patients vary by histology and are largely explained by modifiable factors, Gynecologic oncology. 2024 Feb 09

Holm JB, France MT, Gajer P, Ma B, Brotman RM, Shardell M, Forney L, Ravel J

Correction: Integrating compositional and functional content to describe vaginal microbiomes in health and disease, Microbiome. 2024 Feb 06

Wan Y, Wang C, Zhang X, Yin Y, Liu M, Ma B, Duan L, Ma Y, Zhang W, Zheng C, Chao D, Wang F, Xia Y, Li W

Micelle-directed self-assembly of single-crystal-like mesoporous stoichiometric oxides for high-performance lithium storage, National science review. 2024 Feb 06

Robbins SJ, Brown SE, Stennett CA, Tuddenham S, Johnston ED, Wnorowski AM, Ravel J, He X, Mark KS, Brotman RM

Uterine fibroids and longitudinal profiles of the vaginal microbiota in a cohort presenting for transvaginal ultrasound, PloS one. 2024 Feb 05

Eshel M, Milon B, Hertzano R, Elkon R

The cells of the sensory epithelium, and not the stria vascularis, are the main cochlear cells related to the genetic pathogenesis of age-related hearing loss, American journal of human genetics. 2024 Feb 02

Rodriguez I, Rossi NM, Keskus AG, Xie Y, Ahmad T, Bryant A, Lou H, Paredes JG, Milano R, Rao N, Tulsyan S, Boland JF, Luo W, Liu J, O'Hanlon T, Bess J, Mukhina V, Gaykalova D, Yuki Y, Malik L, Billingsley KJ, Blauwendraat C, Carrington M, Yeager M, Mirabello L, Kolmogorov M, Dean M

Insights into the mechanisms and structure of breakage-fusion-bridge cycles in cervical cancer using long-read sequencing, American journal of human genetics. 2024 Jan 25

Winkler SS, Tian C, Casablanca Y, Bateman NW, Jokajtys S, Kucera CW, Tarney CM, Chan JK, Richardson MT, Kapp DS, Liao CI, Hamilton CA, Leath CA, Reddy M, Cote ML, O'Connor TD, Jones NL, Rocconi RP, Powell MA, Farley J, Shriver CD, Conrads TP, Phippen NT, Maxwell GL, Darcy KM

Racial, ethnic and country of origin disparities in aggressive endometrial cancer histologic subtypes, Gynecologic oncology. 2024 Jan 25

Meeker TJ, Kim HJ, Tulloch IK, Keaser ML, Seminowicz DA, Dorsey SG

Secondary analysis: heat and self-report pain sensitivity associate with biological sex and racialized sociocultural group but may not be mediated by anxiety or pain catastrophizing, Pain reports. 2024 Jan 24

Vagias H, Byrne ML, Millist L, White O, Clough M, Fielding J

Visuo-Cognitive Phenotypes in Early Multiple Sclerosis: A Multisystem Model of Visual Processing, Journal of clinical medicine. 2024 Jan 23

Meiller TF, Fraser CM, Grant-Beurmann S, Humphrys M, Tallon L, Sadzewicz LD, Jabra-Rizk MA, Alfaifi A, Kensara A, Molitoris JK, Witek M, Mendes WS, Regine WF, Tran PT, Miller RC, Sultan AS

A Longitudinal Metagenomic Comparative Analysis of Oral Microbiome Shifts in Patients Receiving Proton Radiation versus Photon Radiation for Head and Neck Cancer, Journal of cancer & allied specialties. 2024 Jan 22

Ren L, Ling X, Alexander G, Molitoris J, Choi J, Schumaker L, Mehra R, Gaykalova D

Radiomic Biomarkers of Locoregional Recurrence: Prognostic Insights from Oral Cavity Squamous Cell Carcinoma preoperative CT scans, Research square. 2024 Jan 22

Burris HH, Yang N, Riis V, Valeri L, South EC, Ravel J, Elovitz MA

The role of neighborhood deprivation in the cervicovaginal microbiota, American journal of obstetrics & gynecology MFM. 2024 Jan 19

Adediran TY, Robinson GL, Johnson JK, Liang Y, Bejo S, Leekha S, Rasko DA, Stine OC, Harris AD, Thom KA

Factors associated with patient-to-healthcare personnel (HCP) and HCP-to-subsequent patient transmission of methicillin-resistant , Infection control and hospital epidemiology. 2024 Jan 18

Ma B, Li Q, Zhang J, Mi Y, Tan W, Guo Z

Improvement of the Antioxidant and Antitumor Activities of Benzimidazole-Chitosan Quaternary Ammonium Salt on Drug Delivery Nanogels, Marine drugs. 2024 Jan 11

Dorsey SG, Mocci E, Lane MV, Krueger BK

Rapid effects of valproic acid on the fetal brain transcriptome: Implications for brain development and autism, Research square. 2024 Jan 10

Mehta R, Hochberg M, Shardell M, Ryan A, Dong Y, Beamer BA, Peer J, Stuart EA, Schuler M, Gallo JJ, Rathbun AM

Evaluation of Dynamic Effects of Depressive Symptoms on Physical Function in Knee Osteoarthritis, Arthritis care & research. 2024 Jan 10

Liu XY, Jiang RC, Ma B, Wang Y, Yang YZ, Xu C, Sun F, Tan BC

Maize requires Embryo defective27 for embryogenesis and seedling development, Plant physiology. 2024 Jan 10

Kumar A, Brown RA, Roufaeil DB, Gupta A, Lipford EL, Muthusamy D, Zalzman A, Hertzano R, Lowe T, Stains JP, Zalzman M

DeepFreeze 3D-biofabrication for Bioengineering and Storage of Stem Cells in Thick and Large-Scale Human Tissue Analogs, Advanced science (Weinheim, Baden-Wurttemberg, Germany). 2024 Jan 06

Jin Y, Yang X, Sun H, Zhang J, Yang S, Jiang S, Song Q, Zhang G, Ma B, Yang K, Pan L, Huang L, Li Y

Global, Regional, and National Burdens of Otitis Media From 1990 to 2019: A Population Based Study, Ear and hearing. 2024 Jan 05

Nguyen M, Clough M, Cruse B, van der Walt A, Fielding J, White OB

Exploring Factors That Prolong the Diagnosis of Myasthenia Gravis, Neurology. Clinical practice. 2024 Jan 04

Zheng Y, Xue J, Ma B, Huan Z, Wu C, Zhu Y

Mesoporous Bioactive Glass-Graphene Oxide Composite Aerogel with Effective Hemostatic and Antibacterial Activities, ACS applied bio materials. 2024 Jan 03

Hall B, Levy S, Dufault-Thompson K, Arp G, Zhong A, Ndjite GM, Weiss A, Braccia D, Jenkins C, Grant MR, Abeysinghe S, Yang Y, Jermain MD, Wu CH, Ma B, Jiang X

BilR is a gut microbial enzyme that reduces bilirubin to urobilinogen, Nature microbiology. 2024 Jan 03