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Publications - Publications 2022

Hasin N, Riggs LM, Shekhtman T, Ashworth J, Lease R, Oshone RT, Humphries EM, Badner JA, Thomson PA, Glahn DC, Craig DW, Edenberg HJ, Gershon ES, McMahon FJ, Nurnberger JI, Zandi PP, Kelsoe JR, Roach JC, Gould TD, Ament SA

Rare variants implicate NMDA receptor signaling and cerebellar gene networks in risk for bipolar disorder, Molecular psychiatry. 2022 May 11

Meeker TJ, Schmid AC, Keaser ML, Khan SA, Gullapalli RP, Dorsey SG, Greenspan JD, Seminowicz DA

Tonic pain alters functional connectivity of the descending pain modulatory network involving amygdala, periaqueductal gray, parabrachial nucleus and anterior cingulate cortex, NeuroImage. 2022 May 03

Gerson KD, Yang N, Anton L, Levy M, Ravel J, Elovitz MA, Burris HH

Second trimester short cervix is associated with decreased abundance of cervicovaginal lipid metabolites, American journal of obstetrics and gynecology. 2022 Apr 22

White OB, Fielding J, Pelak VS, Schankin CJ

Editorial: Visual Snow: Old Problem, New Understanding, Frontiers in neurology. 2022 Apr 15

Kleckner AS, Kleckner IR, Culakova E, Wojtovich AP, Klinedinst NJ, Kerns SL, Hardy SJ, Inglis JE, Padula GDA, Mustian KM, Janelsins MC, Dorsey SG, Saligan LN, Peppone LJ

Exploratory Analysis of Associations Between Whole Blood Mitochondrial Gene Expression and Cancer-Related Fatigue Among Breast Cancer Survivors, Nursing research. 2022 Apr 13

Bajracharya R, Guralnik JM, Shardell MD, Rathbun AM, Yamashita T, Hochberg MC, Gruber-Baldini AL, Magaziner JS, Orwig DL

Long-term sex differences in all-cause and infection-specific mortality post hip fracture, Journal of the American Geriatrics Society. 2022 Apr 12

Grant-Beurmann S, Jumare J, Ndembi N, Matthew O, Shutt A, Omoigberale A, Martin OA, Fraser CM, Charurat M

Dynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal HIV infection and breastfeeding, Microbiome. 2022 Apr 12

Mudrik L, Arie IG, Amir Y, Shir Y, Hieronymi P, Maoz U, O'Connor T, Schurger A, Vargas M, Vierkant T, Sinnott-Armstrong W, Roskies A

Free will without consciousness?, Trends in cognitive sciences. 2022 Apr 12

Li Q, Chen S, Zhu K, Huang X, Huang Y, Shen Z, Ding S, Gu D, Yang Q, Sun H, Hu F, Wang H, Cai J, Ma B, Zhang R, Shen J

Collateral sensitivity to pleuromutilins in vancomycin-resistant Enterococcus faecium, Nature communications. 2022 Apr 07

Neuwald AF, Yang H, Tracy Nixon B

SPARC: Structural properties associated with residue constraints, Computational and structural biotechnology journal. 2022 Apr 07

Verhoeve VI, Brammer JA, Driscoll TP, Kambouris AR, Rasko DA, Cross AS, Gillespie JJ

Genome Sequencing of Pseudomonas aeruginosa strain M2 illuminates traits of an opportunistic pathogen of burn wounds, G3 (Bethesda, Md.). 2022 Mar 28

Podlesny D, Arze C, Dörner E, Verma S, Dutta S, Walter J, Fricke WF

Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation, Microbiome. 2022 Mar 25

Bakken TE, Jorstad NL, Hu Q, Lake BB, Tian W, Kalmbach BE, Crow M, Hodge RD, Krienen FM, Sorensen SA, Eggermont J, Yao Z, Aevermann BD, Aldridge AI, Bartlett A, Bertagnolli D, Casper T, Castanon RG, Crichton K, Daigle TL, Dalley R, Dee N, Dembrow N, Diep D, Ding SL, Dong W, Fang R, Fischer S, Goldman M, Goldy J, Graybuck LT, Herb BR, Hou X, Kancherla J, Kroll M, Lathia K, van Lew B, Li YE, Liu CS, Liu H, Lucero JD, Mahurkar A, McMillen D, Miller JA, Moussa M, Nery JR, Nicovich PR, Niu SY, Orvis J, Osteen JK, Owen S, Palmer CR, Pham T, Plongthongkum N, Poirion O, Reed NM, Rimorin C, Rivkin A, Romanow WJ, Sedeño-Cortés AE, Siletti K, Somasundaram S, Sulc J, Tieu M, Torkelson A, Tung H, Wang X, Xie F, Yanny AM, Zhang R, Ament SA, Behrens MM, Bravo HC, Chun J, Dobin A, Gillis J, Hertzano R, Hof PR, Höllt T, Horwitz GD, Keene CD, Kharchenko PV, Ko AL, Lelieveldt BP, Luo C, Mukamel EA, Pinto-Duarte A, Preiss S, Regev A, Ren B, Scheuermann RH, Smith K, Spain WJ, White OR, Koch C, Hawrylycz M, Tasic B, Macosko EZ, McCarroll SA, Ting JT, Zeng H, Zhang K, Feng G, Ecker JR, Linnarsson S, Lein ES

Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse, Nature. 2022 Mar 22

Breazeale S, Conley S, Jeon S, Dorsey SG, Kearney J, Yoo B, Redeker NS

Symptom cluster profiles following traumatic orthopaedic injuries, Injury. 2022 Mar 22

Deng B, Ma B, Ma Y, Cao P, Leng X, Huang P, Zhao Y, Ji T, Lu X, Liu L

Doxorubicin and CpG loaded liposomal spherical nucleic acid for enhanced Cancer treatment, Journal of nanobiotechnology. 2022 Mar 18

Lee SY, Lee CM, Ma B, Kamle S, Elias JA, Zhou Y, Lee CG

Targeting Chitinase 1 and Chitinase 3-Like 1 as Novel Therapeutic Strategy of Pulmonary Fibrosis, Frontiers in pharmacology. 2022 Mar 17

Boonstra FM, Clough M, Strik M, van der Walt A, Butzkueven H, White OB, Law M, Fielding J, Kolbe SC

Longitudinal tracking of axonal loss using diffusion magnetic resonance imaging in multiple sclerosis, Brain communications. 2022 Mar 17

Klinedinst NJ, Huang W, Nelson AK, Resnick B, Renn C, Kane MA, Dorsey SG

Inflammatory and Immune Protein Pathways Possible Mechanisms for Pain Following Walking in Knee Osteoarthritis, Nursing research. 2022 Mar 17

Shao S, Ma B, Ai L, Tian X, Zhang L

Foliar Spraying of Selenium Combined with Biochar Alleviates Cadmium Toxicity in Peanuts and Enriches Selenium in Peanut Grains, International journal of environmental research and public health. 2022 Mar 16

Lin M, Paul R, Shapiro SZ, Doulgeris J, O'Connor TE, Tsai CT, Vrionis FD

Biomechanical Study of Cervical Endplate Removal on Subsidence and Migration in Multilevel Anterior Cervical Discectomy and Fusion, Asian spine journal. 2022 Mar 11

Chapoval SP, Lee M, Lemmer A, Ajayi O, Qi X, Neuwald AF, Keegan AD

Identifying Function Determining Residues in Neuroimmune Semaphorin 4A, International journal of molecular sciences. 2022 Mar 11

Moreira RG, Saraiva-Duarte JM, Pereira AC, Sosa-Macias M, Galaviz-Hernandez C, Santolalla ML, Magalhães WCS, Zolini C, Leal TP, Balázs Z, Llerena A, Gilman RH, Mill JG, Borda V, Guio H, O'Connor TD, Tarazona-Santos E, Rodrigues-Soares F

Population genetics of PDE4B (Phosphodiesterase-4B) in neglected native americans: implications for cancer pharmacogenetics, Clinical and translational science. 2022 Mar 10

Thurman AR, Ravel J, Gajer P, Marzinke MA, Ouattara LA, Jacot T, Peet MM, Clark MR, Doncel GF

Vaginal Microbiota and Mucosal Pharmacokinetics of Tenofovir in Healthy Women Using a 90-Day Tenofovir/Levonorgestrel Vaginal Ring, Frontiers in cellular and infection microbiology. 2022 Mar 08

France M, Alizadeh M, Brown S, Ma B, Ravel J

Towards a deeper understanding of the vaginal microbiota, Nature microbiology. 2022 Mar 04

Hertzano R, Mahurkar A

Advancing discovery in hearing research via biologist-friendly access to multi-omic data, Human genetics. 2022 Mar 02

France MT, Fu L, Rutt L, Yang H, Humphrys MS, Narina S, Gajer PM, Ma B, Forney LJ, Ravel J

Insight into the ecology of vaginal bacteria through integrative analyses of metagenomic and metatranscriptomic data, Genome biology. 2022 Mar 01

Chung KH, Park SB, Streckmann F, Wiskemann J, Mohile N, Kleckner AS, Colloca L, Dorsey SG, Kleckner IR

Mechanisms, Mediators, and Moderators of the Effects of Exercise on Chemotherapy-Induced Peripheral Neuropathy, Cancers. 2022 Feb 26

Mao JZ, Soliman MAR, Karamian BA, Khan A, Fritz AG, Avasthi N, DiMaria S, Levy BR, O'Connor TE, Schroeder G, Pollina J, Vaccaro AR, Mullin JP

Anatomical and Technical Considerations of Robot-Assisted Cervical Pedicle Screw Placement: A Cadaveric Study, Global spine journal. 2022 Feb 23

Lemme-Dumit JM, Song Y, Lwin HW, Hernandez-Chavez C, Sundararajan S, Viscardi RM, Ravel J, Pasetti MF, Ma B

Altered Gut Microbiome and Fecal Immune Phenotype in Early Preterm Infants With Leaky Gut, Frontiers in immunology. 2022 Feb 23

Sidiropoulos DN, Rafie CI, Jang JK, Castanon S, Baugh AG, Gonzalez E, Christmas BJ, Narumi VH, Davis-Marcisak EF, Sharma G, Bigelow E, Vaghasia A, Gupta A, Skaist A, Considine M, Wheelan SJ, Ganesan SK, Yu M, Yegnasubramanian S, Stearns V, Connolly RM, Gaykalova DA, Kagohara LT, Jaffee EM, Fertig EJ, Roussos Torres ET

Entinostat decreases immune suppression to promote anti-tumor responses in a HER2+ breast tumor microenvironment, Cancer immunology research. 2022 Feb 21

Wang Y, Wang D, Kang X, Ma Z, Ma Y, Hu X, Ma B, He X, Wang S, Gao B

Postoperative changes in rib cage deviation in adolescent idiopathic scoliosis, Journal of back and musculoskeletal rehabilitation. 2022 Feb 18

Chilton FH, Manichaikul A, Yang C, O'Connor TD, Johnstone LM, Blomquist S, Schembre SM, Sergeant S, Zec M, Tsai MY, Rich SS, Bridgewater SJ, Mathias RA, Hallmark B

Interpreting Clinical Trials With Omega-3 Supplements in the Context of Ancestry and Genetic Variation, Frontiers in nutrition. 2022 Feb 08

Bengtsson RJ, Simpkin AJ, Pulford CV, Low R, Rasko DA, Rigden DJ, Hall N, Barry EM, Tennant SM, Baker KS

Pathogenomic analyses of Shigella isolates inform factors limiting shigellosis prevention and control across LMICs, Nature microbiology. 2022 Jan 31

Weaver KR, Griffioen MA, Klinedinst NJ, Galik E, Duarte AC, Colloca L, Resnick B, Dorsey SG, Renn CL

Quantitative Sensory Testing Across Chronic Pain Conditions and Use in Special Populations, Frontiers in pain research (Lausanne, Switzerland). 2022 Jan 28

Kamle S, Ma B, Lee CM, Schor G, Lee CG, Elias JA

Host Chitinase 3-like-1 is a Universal Therapeutic Target for the Delta, Omicron and Other SARS-CoV-2 Viral Variants in COVID 19, bioRxiv : the preprint server for biology. 2022 Jan 24

Krakowsky Y, Potter E, Hallarn J, Monari B, Wilcox H, Bauer G, Ravel J, Prodger JL

The Effect of Gender-Affirming Medical Care on the Vaginal and Neovaginal Microbiomes of Transgender and Gender-Diverse People, Frontiers in cellular and infection microbiology. 2022 Jan 21

Ferreira CST, Marconi C, Parada CMGL, Ravel J, da Silva MG

Sialidase Activity in the Cervicovaginal Fluid Is Associated With Changes in Bacterial Components of -Deprived Microbiota, Frontiers in cellular and infection microbiology. 2022 Jan 13

Ding J, Ma B, Wei X, Li Y

Detection of by 16S Ribosomal RNA Gene PCR and Metagenomic Next-Generation Sequencing (mNGS), Frontiers in cellular and infection microbiology. 2022 Jan 07

Zhou AE, Shah ZV, Bradwell KR, Munro JB, Berry AA, Serre D, Takala-Harrison S, O'Connor TD, Silva JC, Travassos MA

STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families, BMC bioinformatics. 2022 Jan 06

Erbe R, Gore J, Gemmill K, Gaykalova DA, Fertig EJ

The use of machine learning to discover regulatory networks controlling biological systems, Molecular cell. 2022 Jan 04

Toshchakov VY, Neuwald AF

Correction to: A survey of TIR domain sequence and structure divergence, Immunogenetics. 2022 Jan 03

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