Publications - Publications 2023

Borgogna JC, Grace SG, Holm JB, Aviles Zuniga T, Kadriu H, He X, McCoski SR, Ravel J, Brotman RM, Yeoman CJ

Investigating the impact of condomless vaginal intercourse and lubricant use on the vaginal metabolome: a pre-post observational study, Sexually transmitted infections. 2023 May 31

Liu H, Shetty AC, Ibrahim AS, Filler SG, Bruno VM

Novel Host Pathways Govern Epithelial Cell Invasion of Aspergillus fumigatus, Microbiology spectrum. 2023 May 31

Ma B, Ma Y, Deng B, Xiao P, Huang P, Wang D, Liu L

Tumor microenvironment-responsive spherical nucleic acid nanoparticles for enhanced chemo-immunotherapy, Journal of nanobiotechnology. 2023 May 26

Ament SA, Poulopoulos A

The brain's dark transcriptome: Sequencing RNA in distal compartments of neurons and glia, Current opinion in neurobiology. 2023 May 15

O'Connor TE, Shaw R, Madero-Marroquin R, Roloff GW

Clinical considerations at the intersection of hematopoietic cell transplantation and hereditary hematopoietic malignancy, Frontiers in oncology. 2023 May 12

Mullins KE, Seneviratne C, Shetty AC, Jiang F, Christenson R, Stass S

Proof of Concept: detection of cell free RNA from EDTA plasma in patients with lung cancer and non-cancer patients, Clinical biochemistry. 2023 May 12

Tuddenham S, Shafiq M, Mathad JS, Alexander M, Naik S, Kulkarni V, Deshpande P, Humphrys MS, Holm JB, Khan N, Yadana S, Cheedalla A, Bhosale R, Ghanem KG, Wang T, Wang S, Ma B, Ravel J, Gupta A, Shivakoti R

Association of Pregnancy and HIV Status with Molecular-Bacterial Vaginosis in Indian Women, Journal of acquired immune deficiency syndromes (1999). 2023 May 08

Ma B, Zhang J, Mi Y, Miao Q, Tan W, Guo Z

Preparation of imidazole acids grafted chitosan with enhanced antioxidant, antibacterial and antitumor activities, Carbohydrate polymers. 2023 May 05

Watson KJ, Bromley RE, Sparklin BC, Gasser MT, Bhattacharya T, Lebov JF, Tyson T, Teigen LE, Graf KT, Michalski M, Bruno VM, Lindsey ARI, Hardy RW, Newton ILG, Dunning Hotopp JC

Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs, bioRxiv : the preprint server for biology. 2023 May 03

Dorsey SG, Mocci E, Lane MV, Krueger BK

Rapid effects of valproic acid on the fetal brain transcriptome: Implications for brain development and autism, bioRxiv : the preprint server for biology. 2023 May 02

Hare SM, Adhikari BM, Mo C, Chen S, Wijtenburg SA, Seneviratne C, Kane-Gerard S, Sathyasaikumar KV, Notarangelo FM, Schwarcz R, Kelly DL, Rowland LM, Buchanan RW

Tryptophan challenge in individuals with schizophrenia and healthy controls: acute effects on circulating kynurenine and kynurenic acid, cognition and cerebral blood flow, Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 2023 Apr 28

Green SJ, Torok T, Allen JE, Eloe-Fadrosh E, Jackson SA, Jiang SC, Levine SS, Levy S, Schriml LM, Thomas WK, Wood JM, Tighe SW

Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report, Astrobiology. 2023 Apr 26

Ma B, Gavzy SJ, Saxena V, Song Y, Piao W, Lwin HW, Lakhan R, Iyyathurai J, Li L, France M, Paluskievicz C, Shirkey MW, Hittle L, Munawwar A, Mongodin EF, Bromberg JS

Author Correction: Strain-specific alterations in gut microbiome and host immune responses elicited by tolerogenic Bifidobacterium pseudolongum, Scientific reports. 2023 Apr 24

Li L, Wu L, Kensiski A, Zhao J, Shirkey MW, Song Y, Piao W, Zhang T, Mei Z, Gavzy SJ, Ma B, Saxena V, Lee YS, Xiong Y, Li X, Fan X, Abdi R, Bromberg JS

FRC transplantation restores lymph node conduit defects in laminin α4-deficient mice, JCI insight. 2023 Apr 24

Graf KT, Liu H, Filler SG, Bruno VM

Depletion of Extracellular Chemokines by Aspergillus Melanin, mBio. 2023 Apr 17

Tian Q, Shardell MD, Kuo PL, Tanaka T, Simonsick EM, Moaddel R, Resnick SM, Ferrucci L

Plasma metabolomic signatures of dual decline in memory and gait in older adults, GeroScience. 2023 Apr 13

Vaikakkara Chithran A, Allan DW, O'Connor TP

Adult expression of Semaphorins and Plexins is essential for motor neuron survival, Scientific reports. 2023 Apr 11

Lee CM, He CH, Park JW, Lee JH, Kamle S, Ma B, Akosman B, Cotez R, Chen E, Zhou Y, Herzog EL, Ryu C, Peng X, Rosas IO, Poli S, Bostwick CF, Choi AM, Elias JA, Lee CG

Correction: Chitinase 1 regulates pulmonary fibrosis by modulating TGF-β/SMAD7 pathway via TGFBRAP1 and FOXO3, Life science alliance. 2023 Apr 10

Ma B, Wang X, Liu Q, Zhao Y, Su Z, Chen Y, Hou Y, Shi Z

A peptidoglycan recognition protein regulates the immune response of Rhynchophorus ferrugineus Olivier (Coleoptera: Dryophthoridae) during exposure to pathogenic Gram-positive bacteria and fungi, Developmental and comparative immunology. 2023 Apr 03

Kucera CW, Tian C, Tarney CM, Presti C, Jokajtys S, Winkler SS, Casablanca Y, Bateman NW, Mhawech-Fauceglia P, Wenzel L, Hamilton CA, Chan JK, Jones NL, Rocconi RP, O'Connor TD, Farley JH, Shriver CD, Conrads TP, Phippen NT, Maxwell GL, Darcy KM

Factors Associated With Survival Disparities Between Non-Hispanic Black and White Patients With Uterine Cancer, JAMA network open. 2023 Apr 03

Chun YW, Miyamoto M, Williams CH, Neitzel LR, Silver-Isenstadt M, Cadar AG, Fuller DT, Fong DC, Liu H, Lease R, Kim S, Katagiri M, Durbin MD, Wang KC, Feaster TK, Sheng CC, Diana Neely M, Sreenivasan U, Cortes-Gutierrez M, Finn AV, Schot R, Mancini GMS, Ament SA, Ess KC, Bowman AB, Han Z, Bichell DP, Ru Su Y, Hong CC

Impaired Reorganization of Centrosome Structure Underlies Human Infantile Dilated Cardiomyopathy, Circulation. 2023 Mar 27

Wang Y, Wang D, Zhang G, Ma B, Ma Y, Yang Y, Xing S, Kang X, Gao B

Effects of spinal deformities on lung development in children: a review, Journal of orthopaedic surgery and research. 2023 Mar 27

Shetty AC, Sivinski J, Cornell J, Sadzewicz L, Mahurkar A, Wang XQ, Colloca L, Lin W, Kane MA, Seneviratne C

Peripheral blood transcriptomic profiling indicates molecular mechanisms commonly regulated by binge-drinking and placebo-effects, medRxiv : the preprint server for health sciences. 2023 Mar 24

Holm JB, France MT, Gajer P, Ma B, Brotman RM, Shardell M, Forney L, Ravel J

High-resolution functional description of vaginal microbiomes in health and disease, bioRxiv : the preprint server for biology. 2023 Mar 24

Pelaez JN, Gloss AD, Goldman-Huertas B, Kim B, Lapoint RT, Pimentel-Solorio G, Verster KI, Aguilar JM, Dittrich ACN, Singhal M, Suzuki HC, Matsunaga T, Armstrong EE, Charboneau JLM, Groen SC, Hembry DH, Ochoa CJ, O'Connor TK, Prost S, Zaaijer S, Nabity PD, Wang J, Rodas E, Liang I, Whiteman NK

Evolution of chemosensory and detoxification gene families across herbivorous Drosophilidae, bioRxiv : the preprint server for biology. 2023 Mar 16

Smith AB, Jung M, Pressler SJ, Mocci E, Dorsey SG

Differential Gene Expression Among Patients With Heart Failure Experiencing Pain, Nursing research. 2023 Mar 15

Ma B, Shao S, Ai L, Chen S, Zhang L

Influences of biochar with selenite on bacterial community in soil and Cd in peanut, Ecotoxicology and environmental safety. 2023 Mar 14

Ma B, Song W, Zhang X, Chen M, Li J, Yang X, Zhang L

Potential application of novel cadmium-tolerant bacteria in bioremediation of Cd-contaminated soil, Ecotoxicology and environmental safety. 2023 Mar 14

Hazen TH, Michalski JM, Tennant SM, Rasko DA

Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli, Nature communications. 2023 Mar 14

Bajracharya R, Guralnik JM, Shardell MD, Hochberg MC, Orwig DL, Magaziner JS

Predictors of mobility status one year post hip fracture among community-dwelling older adults prior to fracture: A prospective cohort study, Journal of the American Geriatrics Society. 2023 Mar 14

Holm JB, Carter KA, Ravel J, Brotman RM

and genital health: molecular clues to an enigmatic vaginal species, Current infectious disease reports. 2023 Mar 07

Humphries EM, Ahn K, Kember RL, Lopes FL, Mocci E, Peralta JM, Blangero J, Glahn DC, Goes FS, Zandi PP, Kochunov P, Van Hout C, Shuldiner AR, Pollin TI, Mitchell BD, Bucan M, Hong LE, McMahon FJ, Ament SA

Genome-wide significant risk loci for mood disorders in the Old Order Amish founder population, Molecular psychiatry. 2023 Mar 07

Yuan Y, Xu J, Ma B, Chen G, Wang Z, Wang S, Jing N, Zhang J, Wang B, Yan W, Zhang Q, Zhao Q, Li Y

Characteristics of humoral and cellular responses to coronavirus disease 2019 (COVID-19) inactivated vaccine in central China: A prospective, multicenter, longitudinal study, Frontiers in immunology. 2023 Mar 03

Bauer S, Aeissen V, Bubeck AM, Kienes I, Ellwanger K, Scheurenbrand M, Rexhepi F, Ramanathan S, Rosenstiel P, Fricke WF, Kufer TA

NLRC5 affects diet-induced adiposity in female mice and co-regulates peroxisome proliferator-activated receptor PPARγ target genes, iScience. 2023 Mar 02

Zhang Q, Yan W, Zhu Y, Jing N, Wang S, Yuan Y, Ma B, Xu J, Chu Y, Zhang J, Ma Q, Wang B, Xu W, Zhu L, Sun Y, Shi C, Fang J, Li Y, Liu S

Evaluation of Commercial Products for Colistin and Polymyxin B Susceptibility Testing for -Positive and Negative and in China, Infection and drug resistance. 2023 Feb 27

Schriml LM, Lichenstein R, Bisordi K, Bearer C, Baron JA, Greene C

Modeling the enigma of complex disease etiology, Journal of translational medicine. 2023 Feb 25

Yang C, Veenstra J, Bartz T, Pahl M, Hallmark B, Chen YI, Westra J, Steffen L, Brown C, Siscovick D, Tsai M, Wood A, Rich S, Smith C, O'Connor T, Mozaffarian D, Grant S, Chilton F, Tintle N, Lemaitre R, Manichaikul A

Genome-Wide Association Studies and fine-mapping of genomic loci for n-3 and n-6 Polyunsaturated Fatty Acids in Hispanic American and African American Cohorts, Research square. 2023 Feb 24

Liu Q, Ma B, Song M, Sun W, Zhang H

Age-dependent changes in the prognostic advantage of papillary thyroid cancer in women: A SEER-based study, Clinical endocrinology. 2023 Feb 18

Pressler SJ, Jung M, Giordani B, Titler MG, Gradus-Pizlo I, Lake KR, Wierenga KL, Clark DG, Perkins SM, Smith DG, Mocci E, Dorsey SG

Evaluating depressive symptoms, BDNF Val66Met, and APOE-ε4 as moderators of response to computerized cognitive training in heart failure, Heart & lung : the journal of critical care. 2023 Feb 17

Kim SH, Fagan K, Dorsey SB, Grider DJ

Myxoid perineurioma: an entity with many mimics, Dermatology online journal. 2023 Feb 15

Choueiri TK, Labaki C, Bakouny Z, Hsu CY, Schmidt AL, de Lima Lopes G, Hwang C, Singh SRK, Jani C, Weissmann LB, Griffiths EA, Halabi S, Wu U, Berg S, O'Connor TE, Wise-Draper TM, Panagiotou OA, Klein EJ, Joshi M, Yared F, Dutra MS, Gatson NTN, Blau S, Singh H, Nanchal R, McKay RR, Nonato TK, Quinn R, Rubinstein SM, Puc M, Mavromatis BH, Vikas P, Faller B, Zaren HA, Del Prete S, Russell K, Reuben DY, Accordino MK, Singh H, Friese CR, Mishra S, Rivera DR, Shyr Y, Farmakiotis D, Warner JL

Breakthrough SARS-CoV-2 infections among patients with cancer following two and three doses of COVID-19 mRNA vaccines: a retrospective observational study from the COVID-19 and Cancer Consortium, Lancet regional health. Americas. 2023 Feb 13

Robbins SJ, Brown SE, Stennett CA, Tuddenham S, Johnston ED, He X, Mark KS, Brotman RM

Comparison of computer-assisted self-interview (CASI) versus clinician-interview (CI) for self-reported vulvovaginal symptoms, Sexually transmitted diseases. 2023 Feb 08

Liu L, Jiao J, Yang X, Zhang J, Yu H, Li C, Pan L, Ma B, Sun H, Zhang J, Li Y

Global, regional, and national burdens of blindness and vision loss in children and adolescents from 1990 to 2019: A trend analysis, Ophthalmology. 2023 Feb 07

Leal TP, French-Kwawu JN, Gouveia MH, Borda V, Inca-Martinez M, Mason EA, Horimoto AR, Loesch DP, Sarihan EI, Cornejo-Olivas MR, Torres LE, Mazzetti-Soler PE, Cosentino C, Sarapura-Castro EH, Rivera-Valdivia A, Medina AC, Dieguez EM, Raggio VE, Lescano A, Tumas V, Borges V, Ferraz HB, Rieder CR, Schumacher-Schuh A, Santos-Lobato BL, Velez-Pardo C, Jimenez-Del-Rio M, Lopera F, Moreno S, Chana-Cuevas P, Fernandez W, Arboleda G, Arboleda H, Arboleda Bustos CE, Yearout D, Lima-Costa MF, Tarazona E, Zabetian C, Thornton TA, O'Connor TD, Mata IF

X-Chromosome Association Study in Latin American Cohorts Identifies New Loci in Parkinson Disease, medRxiv : the preprint server for health sciences. 2023 Feb 02

Barton JJS, Hershenfeld SA, Johnston JL, Kim JS, Ranalli PJ, Salman MS, Tyndel FJ, White OB, Wong AM, Zackon DH

James Sharpe's Contributions to Neurology and Neuro-ophthalmology: A Posthumous Tribute 10 Years On, The Canadian journal of neurological sciences. Le journal canadien des sciences neurologiques. 2023 Jan 30

Xu Q, Yang X, Zhang R, Li Y, Yan Z, Li X, Ma B, Liu Y, Lin A, Han S, Li K, Chen L

Embryotoxicity and Teratogenicity of Steroidal Saponin Isolated from , Toxics. 2023 Jan 30

Dhar UK, Menzer EL, Lin M, Hagerty V, O'Connor T, Tsai CT, Vrionis FD

Factors influencing cage subsidence in anterior cervical corpectomy and discectomy: a systematic review, European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society. 2023 Jan 28

Alizadeh M, Sampaio Moura N, Schledwitz A, Patil SA, Ravel J, Raufman JP

Big Data in Gastroenterology Research, International journal of molecular sciences. 2023 Jan 27

Elsasser TH, Ma B, Ravel J, Kahl S, Gajer P, Cross A

Short-term feeding of defatted bovine colostrum mitigates inflammation in the gut via changes in metabolites and microbiota in a chicken animal model, Animal microbiome. 2023 Jan 26

Tebben K, Yirampo S, Coulibaly D, Koné AK, Laurens MB, Stucke EM, Dembélé A, Tolo Y, Traoré K, Niangaly A, Berry AA, Kouriba B, Plowe CV, Doumbo OK, Lyke KE, Takala-Harrison S, Thera MA, Travassos MA, Serre D

Malian children infected with Plasmodium ovale and Plasmodium falciparum display very similar gene expression profiles, PLoS neglected tropical diseases. 2023 Jan 25

Solly EJ, Clough M, McKendrick AM, White OB, Fielding J

Eye movement characteristics are not significantly influenced by psychiatric comorbidities in people with visual snow syndrome, Brain research. 2023 Jan 25

Gémes K, Holm J, Frumento P, Almondo G, Bottai M, Friberg E, Alexanderson K

A prognostic model for predicting the duration of 20,049 sickness absence spells due to shoulder lesions in a population-based cohort in Sweden, PloS one. 2023 Jan 20

Ma B, Gavzy SJ, Saxena V, Song Y, Piao W, Lwin HW, Lakhan R, Lyyathurai J, Li L, France M, Paluskievicz C, Shirkey MW, Hittle L, Munawwar A, Mongodin EF, Bromberg JS

Strain-specific alterations in gut microbiome and host immune responses elicited by tolerogenic Bifidobacterium pseudolongum, Scientific reports. 2023 Jan 19

Estaki M, Langsetmo L, Shardell M, Mischel A, Jiang L, Zhong Y, Kaufmann C, Knight R, Stone K, Kado D

Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study, The journals of gerontology. Series A, Biological sciences and medical sciences. 2023 Jan 19

Shamsuzzaman M, Rahman N, Gregory B, Bommakanti A, Zengel JM, Bruno VM, Lindahl L

Inhibition of Ribosome Assembly and Ribosome Translation Has Distinctly Different Effects on Abundance and Paralogue Composition of Ribosomal Protein mRNAs in Saccharomyces cerevisiae, mSystems. 2023 Jan 18

Roloff GW, Shaw R, O'Connor TE, Hathaway F, Drazer MW

Stagnation in quality of next-generation sequencing assays for the diagnosis of hereditary hematopoietic malignancies, Journal of genetic counseling. 2023 Jan 15

Haddad LB, Tang JH, Davis NL, Kourtis AP, Chinula L, Msika A, Tegha G, Hosseinipour MC, Nelson JAE, Hobbs MM, Gajer P, Ravel J, De Paris K

Influence of Hormonal Contraceptive Use and HIV on Cervicovaginal Cytokines and Microbiota in Malawi, mSphere. 2023 Jan 09

Armstrong E, Hemmerling A, Joag V, Huibner S, Kulikova M, Crawford E, Castañeda GR, Anzala O, Obila O, Shahabi K, Ravel J, Coburn B, Cohen CR, Kaul R

Treatment Success Following Standard Antibiotic Treatment for Bacterial Vaginosis Is Not Associated With Pretreatment Genital Immune or Microbial Parameters, Open forum infectious diseases. 2023 Jan 07

Chiappelli J, Adhikari BM, Kvarta MD, Bruce HA, Goldwaser EL, Ma Y, Chen S, Ament S, Shuldiner AR, Mitchell BD, Kochunov P, Wang DJ, Hong LE

Depression, stress, and regional cerebral blood flow, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 2023 Jan 06