Publications - Publications Archive

Lemos A, Ramos MP, Furtado MJ, Carvalho C, Santos MJ, Silva JC, Ventura H

[Diagnostic performance of anti-cyclic citrullinated antibodies and IgM rheumatoid factor in rheumatoid arthritis], Acta reumatológica portuguesa. 2007-12-26

Laroucau K, Thierry S, Vorimore F, Blanco K, Kaleta E, Hoop R, Magnino S, Vanrompay D, Sachse K, Myers GS, Bavoil PM, Vergnaud G, Pourcel C

High resolution typing of Chlamydophila psittaci by multilocus VNTR analysis (MLVA), Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2007-12-17

Khoury MJ, Gwinn M, Yoon PW, Dowling N, Moore CA, Bradley L

The continuum of translation research in genomic medicine: how can we accelerate the appropriate integration of human genome discoveries into health care and disease prevention?, Genetics in medicine : official journal of the American College of Medical Genetics. 2007-12-12

Hamill D, Washington KA, White OR

The effect of hippotherapy on postural control in sitting for children with cerebral palsy, Physical & occupational therapy in pediatrics. 2007-11-22

Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes, Genome research. 2007-11-19

Yu W, Yesupriya A, Wulf A, Qu J, Khoury MJ, Gwinn M

An open source infrastructure for managing knowledge and finding potential collaborators in a domain-specific subset of PubMed, with an example from human genome epidemiology, BMC bioinformatics. 2007-11-09

Brayton KA, Lau AO, Herndon DR, Hannick L, Kappmeyer LS, Berens SJ, Bidwell SL, Brown WC, Crabtree J, Fadrosh D, Feldblum T, Forberger HA, Haas BJ, Howell JM, Khouri H, Koo H, Mann DJ, Norimine J, Paulsen IT, Radune D, Ren Q, Smith RK, Suarez CE, White O, Wortman JR, Knowles DP, McElwain TF, Nene VM

Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa, PLoS pathogens. 2007-10-30

Hahn M, Conterato GM, Frizzo CP, Augusti PR, da Silva JC, Unfer TC, Emanuelli T

Effects of bone disease and calcium supplementation on antioxidant enzymes in postmenopausal women, Clinical biochemistry. 2007-10-26

Neuwald AF

Galpha Gbetagamma dissociation may be due to retraction of a buried lysine and disruption of an aromatic cluster by a GTP-sensing Arg Trp pair, Protein science : a publication of the Protein Society. 2007-10-26

Fraser-Liggett CM, Weissenbach J

Genomics, Current opinion in microbiology. 2007-10-26

Neuwald AF

The CHAIN program: forging evolutionary links to underlying mechanisms, Trends in biochemical sciences. 2007-10-24

Silva JC, Lima Fde M, Vidal CH, Azevedo Filho HC

Schistosomiasis mansoni presenting as a cerebellar tumor: case report, Arquivos de neuro-psiquiatria. 2007-10-22

Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI

The human microbiome project, Nature. 2007-10-18

Garcês S, Santos MJ, Silva JC

[Febrile headache], Acta reumatológica portuguesa. 2007-10-18

Vinagre F, Santos MJ, Silva JC

[Flexibilization of infliximab dose interval in the treatment of ankylosing spondylitis], Acta reumatológica portuguesa. 2007-10-17

Kannan N, Neuwald AF, Taylor SS

Analogous regulatory sites within the alphaC-beta4 loop regions of ZAP-70 tyrosine kinase and AGC kinases, Biochimica et biophysica acta. 2007-09-29

Winograd-Gurvich C, Fitzgerald PB, Georgiou-Karistianis N, Millist L, White O

Inhibitory control and spatial working memory: a saccadic eye movement study of negative symptoms in schizophrenia, Psychiatry research. 2007-09-27

Obici S, Otobone FJ, da Silva Sela VR, Ishida K, da Silva JC, Nakamura CV, Garcia Cortez DA, Audi EA

Preliminary toxicity study of dichloromethane extract of Kielmeyera coriacea stems in mice and rats, Journal of ethnopharmacology. 2007-09-25

Khoury MJ, Gwinn M, Burke W, Bowen S, Zimmern R

Will genomics widen or help heal the schism between medicine and public health?, American journal of preventive medicine. 2007-09-24

Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL

Draft genome of the filarial nematode parasite Brugia malayi, Science (New York, N.Y.). 2007-09-21

Gwinn M, Khoury MJ

Dermatology and the human genome: an epidemiologic approach, Archives of dermatology. 2007-09-18

Moura C, Costa P, Silva JC

Giant coronary aneurysms in Kawasaki disease, Pediatric cardiology. 2007-09-13

Purim-Shem-Tov YA, Silva JC, Rumoro DP

Who should be admitted to the chest pain observation unit?: one urban hospital experience, Critical pathways in cardiology. 2007-09-06

Higgins JP, Little J, Ioannidis JP, Bray MS, Manolio TA, Smeeth L, Sterne JA, Anagnostelis B, Butterworth AS, Danesh J, Dezateux C, Gallacher JE, Gwinn M, Lewis SJ, Minelli C, Pharoah PD, Salanti G, Sanderson S, Smith LA, Taioli E, Thompson JR, Thompson SG, Walker N, Zimmern RL, Khoury MJ

Turning the pump handle: evolving methods for integrating the evidence on gene-disease association, American journal of epidemiology. 2007-09-05

Dunning Hotopp JC, Clark ME, Oliveira DC, Foster JM, Fischer P, Muñoz Torres MC, Giebel JD, Kumar N, Ishmael N, Wang S, Ingram J, Nene RV, Shepard J, Tomkins J, Richards S, Spiro DJ, Ghedin E, Slatko BE, Tettelin H, Werren JH

Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes, Science (New York, N.Y.). 2007-08-30

Gwinn MR, Whipkey DL, Tennant LB, Weston A

Gene expression profiling of di-n-butyl phthalate in normal human mammary epithelial cells, Journal of environmental pathology, toxicology and oncology : official organ of the International Society for Environmental Toxicology and Cancer. 2007-08-29

Auerbach RK, Tuanyok A, Probert WS, Kenefic L, Vogler AJ, Bruce DC, Munk C, Brettin TS, Eppinger M, Ravel J, Wagner DM, Keim P

Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America, PloS one. 2007-08-22

Heinicke S, Livstone MS, Lu C, Oughtred R, Kang F, Angiuoli SV, White O, Botstein D, Dolinski K

The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists, PloS one. 2007-08-22

Khoury MJ, Little J, Higgins J, Ioannidis JP, Gwinn M

Reporting of systematic reviews: the challenge of genetic association studies, PLoS medicine. 2007-08-09

Silva JC, Bertini AM, Taborda W, Becker F, Bebber FR, Aquim GM, Viesi JM

[Glibenclamide in the treatment for gestational diabetes mellitus in a compared study to insulin], Arquivos brasileiros de endocrinologia e metabologia. 2007-08-08

Brotman RM, Erbelding EJ, Jamshidi RM, Klebanoff MA, Zenilman JM, Ghanem KG

Findings associated with recurrence of bacterial vaginosis among adolescents attending sexually transmitted diseases clinics, Journal of pediatric and adolescent gynecology. 2007-08-03

Gurvich C, Georgiou-Karistianis N, Fitzgerald PB, Millist L, White OB

Inhibitory control and spatial working memory in Parkinson's disease, Movement disorders : official journal of the Movement Disorder Society. 2007-07-30

Bryant DA, Costas AM, Maresca JA, Chew AG, Klatt CG, Bateson MM, Tallon LJ, Hostetler J, Nelson WC, Heidelberg JF, Ward DM

Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium, Science (New York, N.Y.). 2007-07-27

Kendall MM, Rasko DA, Sperandio V

Global effects of the cell-to-cell signaling molecules autoinducer-2, autoinducer-3, and epinephrine in a luxS mutant of enterohemorrhagic Escherichia coli, Infection and immunity. 2007-07-16

Eppinger M, Rosovitz MJ, Fricke WF, Rasko DA, Kokorina G, Fayolle C, Lindler LE, Carniel E, Ravel J

The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever, PLoS genetics. 2007-07-10

Wang W, Reitzer L, Rasko DA, Pearson MM, Blick RJ, Laurence C, Hansen EJ

Metabolic analysis of Moraxella catarrhalis and the effect of selected in vitro growth conditions on global gene expression, Infection and immunity. 2007-07-09

Gonçalves CM, Silva JC, Alpendurada MF

Evaluation of the pesticide contamination of groundwater sampled over two years from a vulnerable zone in Portugal, Journal of agricultural and food chemistry. 2007-07-03

Fonseca JE, Cavaleiro J, Teles J, Sousa E, Andreozzi VL, Antunes M, Amaral-Turkman MA, Canhão H, Mourão AF, Lopes J, Caetano-Lopes J, Weinmann P, Sobral M, Nero P, Saavedra MJ, Malcata A, Cruz M, Melo R, Braña A, Miranda L, Patto JV, Barcelos A, da Silva JC, Santos LM, Figueiredo G, Rodrigues M, Jesus H, Quintal A, Carvalho T, da Silva JA, Branco J, Queiroz MV

Contribution for new genetic markers of rheumatoid arthritis activity and severity: sequencing of the tumor necrosis factor-alpha gene promoter, Arthritis research & therapy. 2007-07-03

Torto-Alalibo TA, Tripathy S, Smith BM, Arredondo FD, Zhou L, Li H, Chibucos MC, Qutob D, Gijzen M, Mao C, Sobral BW, Waugh ME, Mitchell TK, Dean RA, Tyler BM

Expressed sequence tags from phytophthora sojae reveal genes specific to development and infection, Molecular plant-microbe interactions : MPMI. 2007-07-02

Desjardins CA, Gundersen-Rindal DE, Hostetler JB, Tallon LJ, Fuester RW, Schatz MC, Pedroni MJ, Fadrosh DW, Haas BJ, Toms BS, Chen D, Nene V

Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus, BMC microbiology. 2007-06-26

Ioannidis P, Dunning Hotopp JC, Sapountzis P, Siozios S, Tsiamis G, Bordenstein SR, Baldo L, Werren JH, Bourtzis K

New criteria for selecting the origin of DNA replication in Wolbachia and closely related bacteria, BMC genomics. 2007-06-20

Yu W, Yesupriya A, Wulf A, Qu J, Gwinn M, Khoury MJ

An automatic method to generate domain-specific investigator networks using PubMed abstracts, BMC medical informatics and decision making. 2007-06-20

Unfer TC, Müller EI, de Moraes Flores EM, Dressler VL, da Silva JC, Duarte MM, Emanuelli T

Sr and Fe relationship with hormone replacement therapy and bone mineral density, Clinica chimica acta; international journal of clinical chemistry. 2007-06-19

Santos MJ, Capela S, Figueira R, Nero P, Matos AA, Silva C, Miranda L, Barcelos A, Marques A, Teixeira A, Branco J, da Silva JC, de Queiroz MV

[Characterization of a Portuguese population with systemic lupus erytematosus], Acta reumatológica portuguesa. 2007-06-19

Khoury MJ, Gwinn M, Bowen MS

Genomics and public health research, JAMA : the journal of the American Medical Association. 2007-06-06

Milczewski MS, Silva JC, Paterno AS, Kuller F, Kalinowski HJ

Measurement of composite shrinkage using a fibre optic Bragg grating sensor, Journal of biomaterials science. Polymer edition. 2007-06-01

Lee K, Costerton JW, Ravel J, Auerbach RK, Wagner DM, Keim P, Leid JG

Phenotypic and functional characterization of Bacillus anthracis biofilms, Microbiology (Reading, England). 2007-05-28

Messina AF, Katz-Gaynor K, Barton T, Ahmad N, Ghaffar F, Rasko D, McCracken GH

Impact of the pneumococcal conjugate vaccine on serotype distribution and antimicrobial resistance of invasive Streptococcus pneumoniae isolates in Dallas, TX, children from 1999 through 2005, The Pediatric infectious disease journal. 2007-05-28

Ashby MN, Rine J, Mongodin EF, Nelson KE, Dimster-Denk D

Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities, Applied and environmental microbiology. 2007-05-25

Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, Coker PR, Smith KL, Wang B, Kenefic LJ, Fraser-Liggett CM, Wagner DM, Keim P

Global genetic population structure of Bacillus anthracis, PloS one. 2007-05-23

Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, Bonaldo MF, Zhu J, Sinkins SP, Hogenkamp DG, Amedeo P, Arensburger P, Atkinson PW, Bidwell S, Biedler J, Birney E, Bruggner RV, Costas J, Coy MR, Crabtree J, Crawford M, Debruyn B, Decaprio D, Eiglmeier K, Eisenstadt E, El-Dorry H, Gelbart WM, Gomes SL, Hammond M, Hannick LI, Hogan JR, Holmes MH, Jaffe D, Johnston JS, Kennedy RC, Koo H, Kravitz S, Kriventseva EV, Kulp D, Labutti K, Lee E, Li S, Lovin DD, Mao C, Mauceli E, Menck CF, Miller JR, Montgomery P, Mori A, Nascimento AL, Naveira HF, Nusbaum C, O'leary S, Orvis J, Pertea M, Quesneville H, Reidenbach KR, Rogers YH, Roth CW, Schneider JR, Schatz M, Shumway M, Stanke M, Stinson EO, Tubio JM, Vanzee JP, Verjovski-Almeida S, Werner D, White O, Wyder S, Zeng Q, Zhao Q, Zhao Y, Hill CA, Raikhel AS, Soares MB, Knudson DL, Lee NH, Galagan J, Salzberg SL, Paulsen IT, Dimopoulos G, Collins FH, Birren B, Fraser-Liggett CM, Severson DW

Genome sequence of Aedes aegypti, a major arbovirus vector, Science (New York, N.Y.). 2007-05-17

Russell RM, Sharp FC, Rasko DA, Sperandio V

QseA and GrlR/GrlA regulation of the locus of enterocyte effacement genes in enterohemorrhagic Escherichia coli, Journal of bacteriology. 2007-05-11

Dias ES, França-Silva JC, da Silva JC, Monteiro EM, de Paula KM, Gonçalves CM, Barata RA

[Sandflies (Diptera: Psychodidae) in an outbreak of cutaneous leishmaniasis in the State of Minas Gerais], Revista da Sociedade Brasileira de Medicina Tropical. 2007-05-08

Peters J, Wilson DP, Myers G, Timms P, Bavoil PM

Type III secretion à la Chlamydia, Trends in microbiology. 2007-05-07

Myers GS, Parker D, Al-Hasani K, Kennan RM, Seemann T, Ren Q, Badger JH, Selengut JD, Deboy RT, Tettelin H, Boyce JD, McCarl VP, Han X, Nelson WC, Madupu R, Mohamoud Y, Holley T, Fedorova N, Khouri H, Bottomley SP, Whittington RJ, Adler B, Songer JG, Rood JI, Paulsen IT

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus, Nature biotechnology. 2007-04-29

Rasko DA, Esteban CD, Sperandio V

Development of novel plasmid vectors and a promoter trap system in Francisella tularensis compatible with the pFLN10 based plasmids, Plasmid. 2007-04-24

de Castro PC, Hoshino A, da Silva JC, Mendes FR

Possible anxiolytic effect of two extracts of Passiflora quadrangularis L. in experimental models, Phytotherapy research : PTR. 2007-04-24

Cravo AR, Gonçalves P, da Silva JC

[Ptotic Baker's cyst], Acta reumatológica portuguesa. 2007-04-24

Raghavan N, Tettelin H, Miller A, Hostetler J, Tallon L, Knight M

Nimbus (BgI): an active non-LTR retrotransposon of the Schistosoma mansoni snail host Biomphalaria glabrata, International journal for parasitology. 2007-04-19

Cunha MS, da Silva JC, Nakamoto HA, Fels KW, Ferreira MC

[Effects of streptokinase and hyperbaric oxygen therapy on venous occlusion after limb reimplantation in rats], Revista da Associação Médica Brasileira (1992). 2007-04-10

Greene JM, Collins F, Lefkowitz EJ, Roos D, Scheuermann RH, Sobral B, Stevens R, White O, Di Francesco V

National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics, Infection and immunity. 2007-04-09

Suárez KV, Silva JC, Berthoumieu Y, Gomis P, Najim M

ECG beat detection using a geometrical matching approach, IEEE transactions on bio-medical engineering. 2007-04-04

Silva JC, Jham GN, Oliveira RD, Brown L

Purification of the seven tetranortriterpenoids in neem (Azadirachta indica) seed by counter-current chromatography sequentially followed by isocratic preparative reversed-phase high-performance liquid chromatography, Journal of chromatography. A. 2007-03-30

Welch TJ, Fricke WF, McDermott PF, White DG, Rosso ML, Rasko DA, Mammel MK, Eppinger M, Rosovitz MJ, Wagner D, Rahalison L, Leclerc JE, Hinshaw JM, Lindler LE, Cebula TA, Carniel E, Ravel J

Multiple antimicrobial resistance in plague: an emerging public health risk, PloS one. 2007-03-21

Da Silva JC, Cadore S, Nobrega JA, Baccan N

Dilute-and-shoot procedure for the determination of mineral constituents in vinegar samples by axially viewed inductively coupled plasma optical emission spectrometry (ICP OES), Food additives and contaminants. 2007-03-16

Ferdinands JM, Mannino DM, Gwinn ML, Bray MS

ADRB2 Arg16Gly polymorphism, lung function, and mortality: results from the Atherosclerosis Risk in Communities study, PloS one. 2007-03-14

Oliveira CL, de la Hoz L, Silva JC, Torriani IL, Netto FM

Effects of gamma radiation on beta-lactoglobulin: oligomerization and aggregation, Biopolymers. 2007-03-12

Lloyd AL, Rasko DA, Mobley HL

Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli, Journal of bacteriology. 2007-03-09

Beltranena F, Casasola K, Silva JC, Limburg H

Cataract blindness in 4 regions of Guatemala: results of a population-based survey, Ophthalmology. 2007-03-06

Mills RE, Bennett EA, Iskow RC, Devine SE

Which transposable elements are active in the human genome?, Trends in genetics : TIG. 2007-02-27

Kannan N, Haste N, Taylor SS, Neuwald AF

The hallmark of AGC kinase functional divergence is its C-terminal tail, a cis-acting regulatory module, Proceedings of the National Academy of Sciences of the United States of America. 2007-01-16

Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis, Science (New York, N.Y.). 2007-01-12