Publications - Publications Archive

Zwick ME, Mcafee F, Cutler DJ, Read TD, Ravel J, Bowman GR, Galloway DR, Mateczun A

Microarray-based resequencing of multiple Bacillus anthracis isolates, Genome biology. 2004-12-17

Moran MA, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C, Brinkac L, Lewis M, Johri S, Weaver B, Pai G, Eisen JA, Rahe E, Sheldon WM, Ye W, Miller TR, Carlton J, Rasko DA, Paulsen IT, Ren Q, Daugherty SC, Deboy RT, Dodson RJ, Durkin AS, Madupu R, Nelson WC, Sullivan SA, Rosovitz MJ, Haft DH, Selengut J, Ward N

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment, Nature. 2004-12-16

Tettelin H

Streptococcal genomes provide food for thought, Nature biotechnology. 2004-12-07

Silva JC, Kidwell MG

Evolution of P elements in natural populations of Drosophila willistoni and D. sturtevanti, Genetics. 2004-12-06

Silva JC, Rochitte CE, Júnior JS, Tsutsui J, Andrade J, Martinez EE, Moffa PJ, Menegheti JC, Kalil-Filho R, Ramires JF, Nicolau JC

Late coronary artery recanalization effects on left ventricular remodelling and contractility by magnetic resonance imaging, European heart journal. 2004-11-29

Barata RA, Silva JC, Costa RT, Fortes-Dias CL, Silva JC, Paula EV, Prata A, Monteiro EM, Dias ES

Phlebotomine sand flies in Porteirinha, an area of American visceral leishmaniasis transmission in the State of Minas Gerais, Brazil, Memórias do Instituto Oswaldo Cruz. 2004-11-03

Bennett EA, Coleman LE, Tsui C, Pittard WS, Devine SE

Natural genetic variation caused by transposable elements in humans, Genetics. 2004-10-29

Neuwald AF, Liu JS

Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model, BMC bioinformatics. 2004-10-25

Tettelin H, Parkhill J

The use of genome annotation data and its impact on biological conclusions, Nature genetics. 2004-09-29

Gwinn MR, Whipkey DL, Weston A

The effect of oxythioquinox exposure on normal human mammary epithelial cell gene expression: a microarray analysis study, Environmental health : a global access science source. 2004-09-23

Ward N, Larsen Ø, Sakwa J, Bruseth L, Khouri H, Durkin AS, Dimitrov G, Jiang L, Scanlan D, Kang KH, Lewis M, Nelson KE, Methé B, Wu M, Heidelberg JF, Paulsen IT, Fouts D, Ravel J, Tettelin H, Ren Q, Read T, DeBoy RT, Seshadri R, Salzberg SL, Jensen HB, Birkeland NK, Nelson WC, Dodson RJ, Grindhaug SH, Holt I, Eidhammer I, Jonasen I, Vanaken S, Utterback T, Feldblyum TV, Fraser CM, Lillehaug JR, Eisen JA

Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath), PLoS biology. 2004-09-21

Nierman WC, DeShazer D, Kim HS, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC, Davidsen TD, Deboy RT, Dimitrov G, Dodson RJ, Durkin AS, Gwinn ML, Haft DH, Khouri H, Kolonay JF, Madupu R, Mohammoud Y, Nelson WC, Radune D, Romero CM, Sarria S, Selengut J, Shamblin C, Sullivan SA, White O, Yu Y, Zafar N, Zhou L, Fraser CM

Structural flexibility in the Burkholderia mallei genome, Proceedings of the National Academy of Sciences of the United States of America. 2004-09-17

Silva JC, Bastida F, Bidwell SL, Johnson PJ, Carlton JM

A potentially functional mariner transposable element in the protist Trichomonas vaginalis, Molecular biology and evolution. 2004-09-15

McCusker ME, Yoon PW, Gwinn M, Malarcher AM, Neff L, Khoury MJ

Family history of heart disease and cardiovascular disease risk-reducing behaviors, Genetics in medicine : official journal of the American College of Medical Genetics. 2004-09-09

Haft DH, Selengut JD, Brinkac LM, Zafar N, White O

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics, Bioinformatics (Oxford, England). 2004-09-03

Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P

Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing, Proceedings of the National Academy of Sciences of the United States of America. 2004-09-03

Khoury MJ, Millikan R, Little J, Gwinn M

The emergence of epidemiology in the genomics age, International journal of epidemiology. 2004-08-19

Baer ML, Ravel J, Piñeiro SA, Guether-Borg D, Williams HN

Reclassification of salt-water Bdellovibrio sp. as Bacteriovorax marinus sp. nov. and Bacteriovorax litoralis sp. nov, International journal of systematic and evolutionary microbiology. 2004-07-28

Kannan N, Neuwald AF

Evolutionary constraints associated with functional specificity of the CMGC protein kinases MAPK, CDK, GSK, SRPK, DYRK, and CK2alpha, Protein science : a publication of the Protein Society. 2004-07-26

Gunsior M, Breazeale SD, Lind AJ, Ravel J, Janc JW, Townsend CA

The biosynthetic gene cluster for a monocyclic beta-lactam antibiotic, nocardicin A, Chemistry & biology. 2004-07-23

Nunes JP, Silva JC, Maciel MJ

Troponin I in atrial fibrillation with no coronary atherosclerosis, Acta cardiologica. 2004-07-16

Myers GS, Fraser CM

Non-pathogenic bacteria take center stage: a lesson in contrasts, Trends in microbiology. 2004-06-29

Silva JC, Lacava ZG, Kuckelhaus S, Silva LP, Neto LF, Sauro EE, Tedesco AC

Evaluation of the use of low level laser and photosensitizer drugs in healing, Lasers in surgery and medicine. 2004-06-24

Li M, Martin SJ, Bruno VM, Mitchell AP, Davis DA

Candida albicans Rim13p, a protease required for Rim101p processing at acidic and alkaline pHs, Eukaryotic cell. 2004-06-10

Saitoh N, Spahr CS, Patterson SD, Bubulya P, Neuwald AF, Spector DL

Proteomic analysis of interchromatin granule clusters, Molecular biology of the cell. 2004-05-28

Hoffmaster AR, Ravel J, Rasko DA, Chapman GD, Chute MD, Marston CK, De BK, Sacchi CT, Fitzgerald C, Mayer LW, Maiden MC, Priest FG, Barker M, Jiang L, Cer RZ, Rilstone J, Peterson SN, Weyant RS, Galloway DR, Read TD, Popovic T, Fraser CM

Identification of anthrax toxin genes in a Bacillus cereus associated with an illness resembling inhalation anthrax, Proceedings of the National Academy of Sciences of the United States of America. 2004-05-21

Rasko DA, Fraser CM

Bugs N the 'hood, Trends in microbiology. 2004-04-29

Nelson KE, Fouts DE, Mongodin EF, Ravel J, DeBoy RT, Kolonay JF, Rasko DA, Angiuoli SV, Gill SR, Paulsen IT, Peterson J, White O, Nelson WC, Nierman W, Beanan MJ, Brinkac LM, Daugherty SC, Dodson RJ, Durkin AS, Madupu R, Haft DH, Selengut J, Van Aken S, Khouri H, Fedorova N, Forberger H, Tran B, Kathariou S, Wonderling LD, Uhlich GA, Bayles DO, Luchansky JB, Fraser CM

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species, Nucleic acids research. 2004-04-28

Rumoro DP, Silva JC

What works. 1 year, $3 million, 0 problems. Chicago hospital achieves a 6-month ROI with new emergency department information system, and goes from impairing profitability to improving it, Health management technology. 2004-04-19

Seshadri R, Myers GS, Tettelin H, Eisen JA, Heidelberg JF, Dodson RJ, Davidsen TM, DeBoy RT, Fouts DE, Haft DH, Selengut J, Ren Q, Brinkac LM, Madupu R, Kolonay J, Durkin SA, Daugherty SC, Shetty J, Shvartsbeyn A, Gebregeorgis E, Geer K, Tsegaye G, Malek J, Ayodeji B, Shatsman S, McLeod MP, Smajs D, Howell JK, Pal S, Amin A, Vashisth P, McNeill TZ, Xiang Q, Sodergren E, Baca E, Weinstock GM, Norris SJ, Fraser CM, Paulsen IT

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes, Proceedings of the National Academy of Sciences of the United States of America. 2004-04-02

Moura C, Carriço A, Baptista MJ, Vieira A, Silva JC, Moreira J, Areias JC

Balloon pulmonary valvotomy performed in the first year of life, Revista portuguesa de cardiologia : orgão oficial da Sociedade Portuguesa de Cardiologia = Portuguese journal of cardiology : an official journal of the Portuguese Society of Cardiology. 2004-04-02

Bruno VM, Mitchell AP

Large-scale gene function analysis in Candida albicans, Trends in microbiology. 2004-03-30

Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, Brownlie JC, McGraw EA, Martin W, Esser C, Ahmadinejad N, Wiegand C, Madupu R, Beanan MJ, Brinkac LM, Daugherty SC, Durkin AS, Kolonay JF, Nelson WC, Mohamoud Y, Lee P, Berry K, Young MB, Utterback T, Weidman J, Nierman WC, Paulsen IT, Nelson KE, Tettelin H, O'Neill SL, Eisen JA

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements, PLoS biology. 2004-03-16

Radune D, Tettelin H

Optimized multiplex polymerase chain reaction: an effective method for rapid gap closure, Methods in molecular biology (Clifton, N.J.). 2004-03-15

Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, Andersson B, Bontempi E, Eisen J, Angiuoli S, Wanless D, Von Arx A, Murphy L, Lennard N, Salzberg S, Adams MD, White O, Hall N, Stuart K, Fraser CM, El-Sayed NM

Gene synteny and evolution of genome architecture in trypanosomatids, Molecular and biochemical parasitology. 2004-03-08

Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO

Environmental genome shotgun sequencing of the Sargasso Sea, Science (New York, N.Y.). 2004-03-04

Cañón-Franco WA, Bergamaschi DP, Labruna MB, Camargo LM, Silva JC, Pinter A, Gennari SM

Occurrence of anti-Toxoplasma gondii antibodies in dogs in the urban area of Monte Negro, Rondônia, Brazil, Veterinary research communications. 2004-03-02

Rasko DA, Ravel J, Økstad OA, Helgason E, Cer RZ, Jiang L, Shores KA, Fouts DE, Tourasse NJ, Angiuoli SV, Kolonay J, Nelson WC, Kolstø AB, Fraser CM, Read TD

The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1, Nucleic acids research. 2004-02-11

Fielding J, Georgiou-Karistianis N, Bradshaw J, Millist L, Churchyard A, Chiu E, White O

Impaired modulation of the vestibulo-ocular reflex in Huntington's disease, Movement disorders : official journal of the Movement Disorder Society. 2004-01-26

Gunsior M, Ravel J, Challis GL, Townsend CA

Engineering p-hydroxyphenylpyruvate dioxygenase to a p-hydroxymandelate synthase and evidence for the proposed benzene oxide intermediate in homogentisate formation, Biochemistry. 2004-01-20

Oliveira de Carvalho M, Silva JC, Loreto EL

Analyses of P-like transposable element sequences from the genome of Anopheles gambiae, Insect molecular biology. 2004-01-19

Khoury MJ, Yang Q, Gwinn M, Little J, Dana Flanders W

An epidemiologic assessment of genomic profiling for measuring susceptibility to common diseases and targeting interventions, Genetics in medicine : official journal of the American College of Medical Genetics. 2004-01-16