Publications - Publications Archive

Methé BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM

Genome of Geobacter sulfurreducens: metal reduction in subsurface environments, Science (New York, N.Y.). 2003-12-12

Nobile CJ, Bruno VM, Richard ML, Davis DA, Mitchell AP

Genetic control of chlamydospore formation in Candida albicans, Microbiology (Reading, England). 2003-12-09

Silva JC, Shabalina SA, Harris DG, Spouge JL, Kondrashovi AS

Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes, Genetical research. 2003-11-17

Ono T, Losada A, Hirano M, Myers MP, Neuwald AF, Hirano T

Differential contributions of condensin I and condensin II to mitotic chromosome architecture in vertebrate cells, Cell. 2003-10-08

Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies, Nucleic acids research. 2003-09-22

Nelson KE, Fleischmann RD, DeBoy RT, Paulsen IT, Fouts DE, Eisen JA, Daugherty SC, Dodson RJ, Durkin AS, Gwinn M, Haft DH, Kolonay JF, Nelson WC, Mason T, Tallon L, Gray J, Granger D, Tettelin H, Dong H, Galvin JL, Duncan MJ, Dewhirst FE, Fraser CM

Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83, Journal of bacteriology. 2003-09-01

Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty S, Brinkac L, Beanan MJ, Haft DH, Nelson WC, Davidsen T, Zafar N, Zhou L, Liu J, Yuan Q, Khouri H, Fedorova N, Tran B, Russell D, Berry K, Utterback T, Van Aken SE, Feldblyum TV, D'Ascenzo M, Deng WL, Ramos AR, Alfano JR, Cartinhour S, Chatterjee AK, Delaney TP, Lazarowitz SG, Martin GB, Schneider DJ, Tang X, Bender CL, White O, Fraser CM, Collmer A

The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000, Proceedings of the National Academy of Sciences of the United States of America. 2003-08-19

Miller ES, Heidelberg JF, Eisen JA, Nelson WC, Durkin AS, Ciecko A, Feldblyum TV, White O, Paulsen IT, Nierman WC, Lee J, Szczypinski B, Fraser CM

Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage, Journal of bacteriology. 2003-08-18

Tsui C, Coleman LE, Griffith JL, Bennett EA, Goodson SG, Scott JD, Pittard WS, Devine SE

Single nucleotide polymorphisms (SNPs) that map to gaps in the human SNP map, Nucleic acids research. 2003-08-08

El-Sayed NM, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S, Tweedie A, Biteau N, Khalak HG, Lin X, Mason T, Hannick L, Caler E, Blandin G, Bartholomeu D, Simpson AJ, Kaul S, Zhao H, Pai G, Van Aken S, Utterback T, Haas B, Koo HL, Umayam L, Suh B, Gerrard C, Leech V, Qi R, Zhou S, Schwartz D, Feldblyum T, Salzberg S, Tait A, Turner CM, Ullu E, White O, Melville S, Adams MD, Fraser CM, Donelson JE

The sequence and analysis of Trypanosoma brucei chromosome II, Nucleic acids research. 2003-08-08

Parmigiani SV, Barini R, Costa SC, Amaral E, da Silva JC, Pinto e Silva JL

Accuracy of the serological ELISA test compared with the polymerase chain reaction for the diagnosis of cytomegalovirus infection in pregnancy, São Paulo medical journal = Revista paulista de medicina. 2003-08-08

Neuwald AF

Evolutionary clues to DNA polymerase III beta clamp structural mechanisms, Nucleic acids research. 2003-07-30

Griffith JL, Coleman LE, Raymond AS, Goodson SG, Pittard WS, Tsui C, Devine SE

Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae, Genetics. 2003-07-21

Mongodin E, Finan J, Climo MW, Rosato A, Gill S, Archer GL

Microarray transcription analysis of clinical Staphylococcus aureus isolates resistant to vancomycin, Journal of bacteriology. 2003-07-17

Mueller A, Wallner K, Corriveau J, Arthurs S, Gwinn M, Sutlief S

A reappraisal of local anesthesia for prostate brachytherapy, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology. 2003-07-16

Cañón-Franco WA, Bergamaschi DP, Labruna MB, Camargo LM, Souza SL, Silva JC, Pinter A, Dubey JP, Gennari SM

Prevalence of antibodies to Neospora caninum in dogs from Amazon, Brazil, Veterinary parasitology. 2003-07-15

Chernicharo CA, Silva JC, Zerbini AM, Godinho VM

Inactivation of E. coli and helminth eggs in aerobic and anaerobic effluents using UV radiation, Water science and technology : a journal of the International Association on Water Pollution Research. 2003-06-30

Kasukawa T, Furuno M, Nikaido I, Bono H, Hume DA, Bult C, Hill DP, Baldarelli R, Gough J, Kanapin A, Matsuda H, Schriml LM, Hayashizaki Y, Okazaki Y, Quackenbush J

Development and evaluation of an automated annotation pipeline and cDNA annotation system, Genome research. 2003-06-23

Baldarelli RM, Hill DP, Blake JA, Adachi J, Furuno M, Bradt D, Corbani LE, Cousins S, Frazer KS, Qi D, Yang L, Ramachandran S, Reed D, Zhu Y, Kasukawa T, Ringwald M, King BL, Maltais LJ, McKenzie LM, Schriml LM, Maglott D, Church DM, Pruitt K, Eppig JT, Richardson JE, Kadin JA, Bult CJ

Connecting sequence and biology in the laboratory mouse, Genome research. 2003-06-23

Schriml LM, Hill DP, Blake JA, Bono H, Wynshaw-Boris A, Pavan WJ, Ring BZ, Beisel K, Setou M, Okazaki Y, ,

Human disease genes and their cloned mouse orthologs: exploration of the FANTOM2 cDNA sequence data set, Genome research. 2003-06-23

Wortman JR, Haas BJ, Hannick LI, Smith RK, Maiti R, Ronning CM, Chan AP, Yu C, Ayele M, Whitelaw CA, White OR, Town CD

Annotation of the Arabidopsis genome, Plant physiology. 2003-06-13

Cardoso SR, da Silva JC, da Costa RT, Mayrink W, Melo MN, Michalick MS, Liu IA, Fujiwara RT, Nascimento E

Identification and purification of immunogenic proteins from nonliving promastigote polyvalent Leishmania vaccine (Leishvacin ), Revista da Sociedade Brasileira de Medicina Tropical. 2003-06-10

Ravel J, Cornelis P

Genomics of pyoverdine-mediated iron uptake in pseudomonads, Trends in microbiology. 2003-06-03

Morris J, Gwinn M, Clyne M, Khoury MJ

Public knowledge regarding the role of genetic susceptibility to environmentally induced health conditions, Community genetics. 2003-05-15

Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H, Fouts DE, Eisen JA, Gill SR, Holtzapple EK, Okstad OA, Helgason E, Rilstone J, Wu M, Kolonay JF, Beanan MJ, Dodson RJ, Brinkac LM, Gwinn M, DeBoy RT, Madpu R, Daugherty SC, Durkin AS, Haft DH, Nelson WC, Peterson JD, Pop M, Khouri HM, Radune D, Benton JL, Mahamoud Y, Jiang L, Hance IR, Weidman JF, Berry KJ, Plaut RD, Wolf AM, Watkins KL, Nierman WC, Hazen A, Cline R, Redmond C, Thwaite JE, White O, Salzberg SL, Thomason B, Friedlander AM, Koehler TM, Hanna PC, Kolstø AB, Fraser CM

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria, Nature. 2003-04-30

Salzberg S, Birney E, Eddy S, White O

Unrestricted free access works and must continue, Nature. 2003-04-24

Prata A, Silva-Vergara ML, Costa L, Rocha A, Krolewiecki A, Silva JC, de Paula EV, Pimenta Junior FG, Giraldo LE

Efficacy of azithromycin in the treatment of cutaneous leishmaniasis, Revista da Sociedade Brasileira de Medicina Tropical. 2003-04-22

Lozniewski A, Haristoy X, Rasko DA, Hatier R, Plénat F, Taylor DE, Angioi-Duprez K

Influence of Lewis antigen expression by Helicobacter pylori on bacterial internalization by gastric epithelial cells, Infection and immunity. 2003-04-21

Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM, Beanan MJ, Deboy RT, Daugherty SC, Brinkac LM, Madupu R, Dodson RJ, Khouri HM, Lee KH, Carty HA, Scanlan D, Heinzen RA, Thompson HA, Samuel JE, Fraser CM, Heidelberg JF

Complete genome sequence of the Q-fever pathogen Coxiella burnetii, Proceedings of the National Academy of Sciences of the United States of America. 2003-04-18

Little J, Khoury MJ, Bradley L, Clyne M, Gwinn M, Lin B, Lindegren ML, Yoon P

The human genome project is complete. How do we develop a handle for the pump?, American journal of epidemiology. 2003-04-16

de Lima Fde M, Pessoa LA, da Silva JC, Jungman P, Maranhão S

[Calvarial tuberculosis: case report], Arquivos de neuro-psiquiatria. 2003-04-16

Neuwald AF, Kannan N, Poleksic A, Hata N, Liu JS

Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases, Genome research. 2003-04-02

Soulier S, Hudrisier M, Da Silva JC, Maeder C, Viglietta C, Besnard N, Vilotte JL

Substitution of the alpha-lactalbumin transcription unit by a CAT cDNA within a BAC clone silenced the locus in transgenic mice without affecting the physically linked Cyclin T1 gene, Genetics, selection, evolution : GSE. 2003-03-13

Mack LR, Chan SB, Silva JC, Hogan TM

The use of head computed tomography in elderly patients sustaining minor head trauma, The Journal of emergency medicine. 2003-02-28

Hunt SC, Gwinn M, Adams TD

Family history assessment: strategies for prevention of cardiovascular disease, American journal of preventive medicine. 2003-02-05

Little J, Gwinn M, Khoury M

Polymorphisms of adrenergic receptors and the risk of heart failure, The New England journal of medicine. 2003-01-30

Bruggemann H, Baumer S, Fricke WF, Wiezer A, Liesegang H, Decker I, Herzberg C, Martinez-Arias R, Merkl R, Henne A, Gottschalk G

The genome sequence of Clostridium tetani, the causative agent of tetanus disease, Proceedings of the National Academy of Sciences of the United States of America. 2003-01-27

Dunning Hotopp JC, Auchtung TA, Hogan DA, Hausinger RP

Intrinsic tryptophan fluorescence as a probe of metal and alpha-ketoglutarate binding to TfdA, a mononuclear non-heme iron dioxygenase, Journal of inorganic biochemistry. 2003-01-22

Haft DH, Selengut JD, White O

The TIGRFAMs database of protein families, Nucleic acids research. 2003-01-09

Wheeler DL, Church DM, Federhen S, Lash AE, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Tatusova TA, Wagner L

Database resources of the National Center for Biotechnology, Nucleic acids research. 2003-01-09