Publications - Publications 2018

Liu YL, Ding YZ, Dai JF, Ma B, He JJ, Ma WM, Lv JL, Ma XY, Ou YW, Wang J, Liu YS, Chang HY, Wang YL, Zhang Q, Liu XT, Zhang YG, Zhang J

Development of a New RT-PCR with Multiple Primers for Detecting Southern African Territories Foot-and-mouth Disease Viruses, Journal of veterinary research. 2018 Dec 31

Neuwald AF, Altschul SF

Statistical investigations of protein residue direct couplings, PLoS computational biology. 2018 Dec 31

Hertzano R, Tomlinson JA, Mackowiak PA

Goya's Lost Hearing: A Twenty-First Century Perspective on Its Cause, Effects and Possible Treatment, The American journal of the medical sciences. 2018 Dec 24

Hicks GE, Shardell MD, Miller RR, Eastlack M, Orwig DL, Goodpaster BH, Chomentowski PJ, Hochberg MC, Rathbun AM, Cauley JA, Harris T, Satterfield S, Schafer AL, Magaziner J

Trunk Muscle Composition 2 Months After Hip Fracture: Findings From the Baltimore Hip Studies, Archives of physical medicine and rehabilitation. 2018 Dec 19

Dooley DM, Griffiths EJ, Gosal GS, Buttigieg PL, Hoehndorf R, Lange MC, Schriml LM, Brinkman FSL, Hsiao WWL

FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration, NPJ science of food. 2018 Dec 18

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA

Minimum Information about an Uncultivated Virus Genome (MIUViG), Nature biotechnology. 2018 Dec 17

Ternes AM, Clough M, Foletta P, White O, Fielding J

Characterization of inhibitory failure in Multiple Sclerosis: Evidence of impaired conflict resolution, Journal of clinical and experimental neuropsychology. 2018 Dec 10

Tam J, Hamza T, Ma B, Chen K, Beilhartz GL, Ravel J, Feng H, Melnyk RA

Host-targeted niclosamide inhibits C. difficile virulence and prevents disease in mice without disrupting the gut microbiota, Nature communications. 2018 Dec 07

Chung M, Munro JB, Tettelin H, Dunning Hotopp JC

Using Core Genome Alignments To Assign Bacterial Species, mSystems. 2018 Dec 04

Lopatina T, Favaro E, Grange C, Cedrino M, Ranghino A, Occhipinti S, Fallo S, Buffolo F, Gaykalova DA, Zanone MM, Romagnoli R, Camussi G

PDGF enhances the protective effect of adipose stem cell-derived extracellular vesicles in a model of acute hindlimb ischemia, Scientific reports. 2018 Dec 04

Budde M, Friedrichs S, Alliey-Rodriguez N, Ament S, Badner JA, Berrettini WH, Bloss CS, Byerley W, Cichon S, Comes AL, Coryell W, Craig DW, Degenhardt F, Edenberg HJ, Foroud T, Forstner AJ, Frank J, Gershon ES, Goes FS, Greenwood TA, Guo Y, Hipolito M, Hood L, Keating BJ, Koller DL, Lawson WB, Liu C, Mahon PB, McInnis MG, McMahon FJ, Meier SM, Mühleisen TW, Murray SS, Nievergelt CM, Nurnberger JI, Nwulia EA, Potash JB, Quarless D, Rice J, Roach JC, Scheftner WA, Schork NJ, Shekhtman T, Shilling PD, Smith EN, Streit F, Strohmaier J, Szelinger S, Treutlein J, Witt SH, Zandi PP, Zhang P, Zöllner S, Bickeböller H, Falkai PG, Kelsoe JR, Nöthen MM, Rietschel M, Schulze TG, Malzahn D

Efficient region-based test strategy uncovers genetic risk factors for functional outcome in bipolar disorder, European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology. 2018 Nov 29

Higginson EE, Ramachandran G, Hazen TH, Kania DA, Rasko DA, Pasetti MF, Levine MM, Tennant SM

Improving Our Understanding of Serovar Paratyphi B through the Engineering and Testing of a Live Attenuated Vaccine Strain, mSphere. 2018 Nov 28

Khan A, Meyers JE, Yavorek S, O'Connor TE, Siasios I, Mullin JP, Pollina J

Comparing Next-Generation Robotic Technology with 3-Dimensional Computed Tomography Navigation Technology for the Insertion of Posterior Pedicle Screws, World neurosurgery. 2018 Nov 27

Sinha R, Ahsan H, Blaser M, Caporaso JG, Carmical JR, Chan AT, Fodor A, Gail MH, Harris CC, Helzlsouer K, Huttenhower C, Knight R, Kong HH, Lai GY, Hutchinson DLS, Le Marchand L, Li H, Orlich MJ, Shi J, Truelove A, Verma M, Vogtmann E, White O, Willett W, Zheng W, Mahabir S, Abnet C

Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017, Microbiome. 2018 Nov 26

Andrianaki AM, Kyrmizi I, Thanopoulou K, Baldin C, Drakos E, Soliman SSM, Shetty AC, McCracken C, Akoumianaki T, Stylianou K, Ioannou P, Pontikoglou C, Papadaki HA, Tzardi M, Belle V, Etienne E, Beauvais A, Samonis G, Kontoyiannis DP, Andreakos E, Bruno VM, Ibrahim AS, Chamilos G

Author Correction: Iron restriction inside macrophages regulates pulmonary host defense against Rhizopus species, Nature communications. 2018 Nov 22

Chessum L, Matern MS, Kelly MC, Johnson SL, Ogawa Y, Milon B, McMurray M, Driver EC, Parker A, Song Y, Codner G, Esapa CT, Prescott J, Trent G, Wells S, Dragich AK, Frolenkov GI, Kelley MW, Marcotti W, Brown SDM, Elkon R, Bowl MR, Hertzano R

Helios is a key transcriptional regulator of outer hair cell maturation, Nature. 2018 Nov 21

Platz EA, Liu CM, Michaud DS, Mueller NT, Ravel J

The Microbiome and Men's Health, Clinical chemistry. 2018 Nov 20

Ma B, McComb E, Gajer P, Yang H, Humphrys M, Okogbule-Wonodi AC, Fasano A, Ravel J, Viscardi RM

Microbial Biomarkers of Intestinal Barrier Maturation in Preterm Infants, Frontiers in microbiology. 2018 Nov 14

Griffioen MA, Ziegler ML, O'Toole RV, Dorsey SG, Renn CL

Change in Pain Score after Administration of Analgesics for Lower Extremity Fracture Pain during Hospitalization, Pain management nursing : official journal of the American Society of Pain Management Nurses. 2018 Nov 12

Chung M, Teigen L, Libro S, Bromley RE, Kumar N, Sadzewicz L, Tallon LJ, Foster JM, Michalski ML, Dunning Hotopp JC

Multispecies Transcriptomics Data Set of Brugia malayi, Its Endosymbiont Bm, and Aedes aegypti across the B. malayi Life Cycle, Microbiology resource announcements. 2018 Nov 08

Richter TKS, Hazen TH, Lam D, Coles CL, Seidman JC, You Y, Silbergeld EK, Fraser CM, Rasko DA

Temporal Variability of Diversity in the Gastrointestinal Tracts of Tanzanian Children with and without Exposure to Antibiotics, mSphere. 2018 Nov 07

Dias JP, Shardell M, Golden SH, Ahima RS, Crews DC

Racial/Ethnic Trends in Prevalence of Diabetic Kidney Disease in the United States, Kidney international reports. 2018 Oct 29

Cannon MV, Bogale H, Rutt L, Humphrys M, Korpe P, Duggal P, Ravel J, Serre D

A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples, Microbiome. 2018 Oct 29

Estes AM, Hearn DJ, Agrawal S, Pierson EA, Dunning Hotopp JC

Comparative genomics of the Erwinia and Enterobacter olive fly endosymbionts, Scientific reports. 2018 Oct 29

Jin J, Li H, Chen Z, Sheng J, Liu T, Ma B, Zhu S, Xia Z

3-D wound scanner: A novel, effective, reliable, and convenient tool for measuring scar area, Burns : journal of the International Society for Burn Injuries. 2018 Oct 25

Foster E, McLean C, White O

Glioneuronal brainstem tumor - It's all in the eyes, Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia. 2018 Oct 23

Roesch C, Popovici J, Bin S, Run V, Kim S, Ramboarina S, Rakotomalala E, Rakotoarison RL, Rasoloharimanana T, Andriamanantena Z, Kumar A, Guillotte-Blisnick M, Huon C, Serre D, Chitnis CE, Vigan-Womas I, Menard D

Genetic diversity in two Plasmodium vivax protein ligands for reticulocyte invasion, PLoS neglected tropical diseases. 2018 Oct 22

Yang GS, Kumar S, Dorsey SG, Starkweather AR, Kelly DL, Lyon DE

Systematic review of genetic polymorphisms associated with psychoneurological symptoms in breast cancer survivors, Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer. 2018 Oct 20

Nowak RG, Bentzen SM, Ravel J, Crowell TA, Dauda W, Ma B, Liu H, Blattner WA, Baral SD, Charurat ME,

Anal Microbial Patterns and Oncogenic Human Papillomavirus in a Pilot Study of Nigerian Men Who Have Sex with Men at Risk for or Living with HIV, AIDS research and human retroviruses. 2018 Oct 17

Cádiz L, Torres A, Valdés R, Vera G, Gutiérrez D, Levine MM, Montero DA, O'Ryan M, Rasko DA, Stine OC, Vidal R, Del Canto F

Coli Surface Antigen 26 Acts as an Adherence Determinant of Enterotoxigenic and Is Cross-Recognized by Anti-CS20 Antibodies, Frontiers in microbiology. 2018 Oct 16

Quinn CC, Swasey KK, Torain JM, Shardell MD, Terrin ML, Barr EA, Gruber-Baldini AL

An mHealth Diabetes Intervention for Glucose Control: Health Care Utilization Analysis, JMIR mHealth and uHealth. 2018 Oct 15

Klebanoff MA, Brotman RM

Treatment of bacterial vaginosis to prevent preterm birth, Lancet (London, England). 2018 Oct 12

von Rosenvinge EC, Palumbo F, Ravel J, Rowthorn V, Hoffmann D

The authors reply, Gut microbes. 2018 Oct 05

Sun H, Huang D, Wang H, Zhou B, Wu X, Ma B, Shi J

Association between Serum Copeptin and Stroke in Rural Areas of Northern China: A Matched Case-Control Study, Disease markers. 2018 Oct 04

Baldin C, Soliman SSM, Jeon HH, Alkhazraji S, Gebremariam T, Gu Y, Bruno VM, Cornely OA, Leather HL, Sugrue MW, Wingard JR, Stevens DA, Edwards JE, Ibrahim AS

PCR-Based Approach Targeting Mucorales-Specific Gene Family for Diagnosis of Mucormycosis, Journal of clinical microbiology. 2018 Sep 25

Ren S, Gaykalova D, Wang J, Guo T, Danilova L, Favorov A, Fertig E, Bishop J, Khan Z, Flam E, Wysocki PT, DeJong P, Ando M, Liu C, Sakai A, Fukusumi T, Haft S, Sadat S, Califano JA

Discovery and development of differentially methylated regions in human papillomavirus-related oropharyngeal squamous cell carcinoma, International journal of cancer. 2018 Sep 21

Song Y, Milon B, Ott S, Zhao X, Sadzewicz L, Shetty A, Boger ET, Tallon LJ, Morell RJ, Mahurkar A, Hertzano R

A comparative analysis of library prep approaches for sequencing low input translatome samples, BMC genomics. 2018 Sep 21

Estes AM, Hearn DJ, Nadendla S, Pierson EA, Dunning Hotopp JC

Draft Genome Sequence of , a Dominant Endosymbiont of Olive Flies, Microbiology resource announcements. 2018 Sep 13

Geller RJ, Brotman RM, O'Brien KM, Fine DM, Zota AR

Phthalate exposure and odds of bacterial vaginosis among U.S. reproductive-aged women, NHANES 2001-2004, Reproductive toxicology (Elmsford, N.Y.). 2018 Sep 09

Schiffman RF, Dorsey SG, McCloskey DJ, Grady PA,

Evolution of the National Institute of Nursing Research logic model for center sustainability, Nursing outlook. 2018 Sep 08

Fraser CL, White OB

There's something in the air, Survey of ophthalmology. 2018 Sep 07

Estes AM, Hearn DJ, Nadendla S, Pierson EA, Dunning Hotopp JC

Draft Genome Sequence of Enterobacter sp. Strain OLF, a Colonizer of Olive Flies, Microbiology resource announcements. 2018 Sep 06

Chung M, Teigen L, Liu H, Libro S, Shetty A, Kumar N, Zhao X, Bromley RE, Tallon LJ, Sadzewicz L, Fraser CM, Rasko DA, Filler SG, Foster JM, Michalski ML, Bruno VM, Dunning Hotopp JC

Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses, Scientific reports. 2018 Sep 06

Wilson DL, Beharry AA, Srivastava A, O'Connor TR, Kool ET

Fluorescence Probes for ALKBH2 Allow the Measurement of DNA Alkylation Repair and Drug Resistance Responses, Angewandte Chemie (International ed. in English). 2018 Sep 03

O'Connor TP, Garton N, Jones C, Estephan M, Lu M, Adler D

Emergency physician utilization of transvaginal ultrasound after initiation of revised sterilization protocol, The American journal of emergency medicine. 2018 Aug 30

Matern MS, Beirl A, Ogawa Y, Song Y, Paladugu N, Kindt KS, Hertzano R

Corrigendum: Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag, Frontiers in cell and developmental biology. 2018 Aug 27

Bascuñán P, Niño-Garcia JP, Galeano-Castañeda Y, Serre D, Correa MM

Factors shaping the gut bacterial community assembly in two main Colombian malaria vectors, Microbiome. 2018 Aug 27

Zheng XF, Hu XY, Ma B, Fang H, Zhang F, Mao YF, Yang FY, Xiao SC, Xia ZF

Interleukin-35 Attenuates D-Galactosamine/Lipopolysaccharide-Induced Liver Injury via Enhancing Interleukin-10 Production in Kupffer Cells, Frontiers in pharmacology. 2018 Aug 24

Andrianaki AM, Kyrmizi I, Thanopoulou K, Baldin C, Drakos E, Soliman SSM, Shetty AC, McCracken C, Akoumianaki T, Stylianou K, Ioannou P, Pontikoglou C, Papadaki HA, Tzardi M, Belle V, Etienne E, Beauvais A, Samonis G, Kontoyiannis DP, Andreakos E, Bruno VM, Ibrahim AS, Chamilos G

Iron restriction inside macrophages regulates pulmonary host defense against Rhizopus species, Nature communications. 2018 Aug 20

Popovici J, Vantaux A, Primault L, Samreth R, Piv EP, Bin S, Kim S, Lek D, Serre D, Menard D

Therapeutic and Transmission-Blocking 
Efficacy of Dihydroartemisinin/Piperaquine and Chloroquine against Plasmodium vivax Malaria, Cambodia, Emerging infectious diseases. 2018 Aug 17

Moaddel R, Shardell M, Khadeer M, Lovett J, Kadriu B, Ravichandran S, Morris PJ, Yuan P, Thomas CJ, Gould TD, Ferrucci L, Zarate CA

Plasma metabolomic profiling of a ketamine and placebo crossover trial of major depressive disorder and healthy control subjects, Psychopharmacology. 2018 Aug 16

Watkins TN, Gebremariam T, Swidergall M, Shetty AC, Graf KT, Alqarihi A, Alkhazraji S, Alsaadi AI, Edwards VL, Filler SG, Ibrahim AS, Bruno VM

Inhibition of EGFR Signaling Protects from Mucormycosis, mBio. 2018 Aug 14

Kessler MD, Pawar NR, Martin SS, Antalis TM, O'Connor TD

Improving Cancer Detection and Treatment with Liquid Biopsies and ptDNA, Trends in cancer. 2018 Aug 01

Ndungo E, Randall A, Hazen TH, Kania DA, Trappl-Kimmons K, Liang X, Barry EM, Kotloff KL, Chakraborty S, Mani S, Rasko DA, Pasetti MF

A Novel Proteome Microarray Discriminates Targets of Human Antibody Reactivity following Oral Vaccination and Experimental Challenge, mSphere. 2018 Aug 01

Kelley DZ, Flam EL, Guo T, Danilova LV, Zamuner FT, Bohrson C, Considine M, Windsor EJ, Bishop JA, Zhang C, Koch WM, Sidransky D, Westra WH, Chung CH, Califano JA, Wheelan S, Favorov AV, Florea L, Fertig EJ, Gaykalova DA

Functional characterization of alternatively spliced GSN in head and neck squamous cell carcinoma, Translational research : the journal of laboratory and clinical medicine. 2018 Jul 26

Richter TKS, Michalski JM, Zanetti L, Tennant SM, Chen WH, Rasko DA

Responses of the Human Gut Population to Pathogen and Antibiotic Disturbances, mSystems. 2018 Jul 24

Dausset C, Patrier S, Gajer P, Thoral C, Lenglet Y, Cardot JM, Judlin P, Ravel J, Nivoliez A

Comparative phase I randomized open-label pilot clinical trial of Gynophilus (Lcr regenerans) immediate release capsules versus slow release muco-adhesive tablets, European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology. 2018 Jul 21

Izzard L, Chung M, Dunning Hotopp J, Vincent G, Paris D, Graves S, Stenos J

Isolation of a divergent strain of Rickettsia japonica from Dew's Australian bat Argasid ticks (Argas (Carios) dewae) in Victoria, Australia, Ticks and tick-borne diseases. 2018 Jul 11

Schroeder HA, Nunn KL, Schaefer A, Henry CE, Lam F, Pauly MH, Whaley KJ, Zeitlin L, Humphrys MS, Ravel J, Lai SK

Herpes simplex virus-binding IgG traps HSV in human cervicovaginal mucus across the menstrual cycle and diverse vaginal microbial composition, Mucosal immunology. 2018 Jul 09

Hazen TH, Mettus R, McElheny CL, Bowler SL, Nagaraj S, Doi Y, Rasko DA

Diversity among bla-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients, Scientific reports. 2018 Jul 06

Tyssen D, Wang YY, Hayward JA, Agius PA, DeLong K, Aldunate M, Ravel J, Moench TR, Cone RA, Tachedjian G

Anti-HIV-1 Activity of Lactic Acid in Human Cervicovaginal Fluid, mSphere. 2018 Jul 05

Glahn DC, Nimgaonkar VL, Raventós H, Contreras J, McIntosh AM, Thomson PA, Jablensky A, McCarthy NS, Charlesworth JC, Blackburn NB, Peralta JM, Knowles EEM, Mathias SR, Ament SA, McMahon FJ, Gur RC, Bucan M, Curran JE, Almasy L, Gur RE, Blangero J

Rediscovering the value of families for psychiatric genetics research, Molecular psychiatry. 2018 Jun 28

Harris DN, Song W, Shetty AC, Levano KS, Cáceres O, Padilla C, Borda V, Tarazona D, Trujillo O, Sanchez C, Kessler MD, Galarza M, Capristano S, Montejo H, Flores-Villanueva PO, Tarazona-Santos E, O'Connor TD, Guio H

Evolutionary genomic dynamics of Peruvians before, during, and after the Inca Empire, Proceedings of the National Academy of Sciences of the United States of America. 2018 Jun 26

Oertel FC, Havla J, Roca-Fernández A, Lizak N, Zimmermann H, Motamedi S, Borisow N, White OB, Bellmann-Strobl J, Albrecht P, Ruprecht K, Jarius S, Palace J, Leite MI, Kuempfel T, Paul F, Brandt AU

Retinal ganglion cell loss in neuromyelitis optica: a longitudinal study, Journal of neurology, neurosurgery, and psychiatry. 2018 Jun 19

Dunning Hotopp JC

Grafting or pruning in the animal tree: lateral gene transfer and gene loss?, BMC genomics. 2018 Jun 18

Salimi S, Shardell M, Miller R, Gruber-Baldini AL, Orwig D, Fedarko N, Hochberg MC, Guralnik JM, Magaziner J

Soluble Tumor Necrosis Factor Alpha Receptor 1, Bone Resorption, and Bone Mineral Density in the Year Following Hip Fractures: The Baltimore Hip Studies, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research. 2018 Jun 15

Rettig EM, Bishop JA, Agrawal N, Chung CH, Sharma R, Zamuner F, Li RJ, Koch WM, Califano JA, Guo T, Gaykalova DA, Fakhry C

HEY1 is expressed independent of NOTCH1 and is associated with poor prognosis in head and neck squamous cell carcinoma, Oral oncology. 2018 Jun 01

Stein-O'Brien G, Kagohara LT, Li S, Thakar M, Ranaweera R, Ozawa H, Cheng H, Considine M, Schmitz S, Favorov AV, Danilova LV, Califano JA, Izumchenko E, Gaykalova DA, Chung CH, Fertig EJ

Integrated time course omics analysis distinguishes immediate therapeutic response from acquired resistance, Genome medicine. 2018 May 23

Girard L, Birse K, Holm JB, Gajer P, Humphrys MS, Garber D, Guenthner P, Noël-Romas L, Abou M, McCorrister S, Westmacott G, Wang L, Rohan LC, Matoba N, McNicholl J, Palmer KE, Ravel J, Burgener AD

Impact of the griffithsin anti-HIV microbicide and placebo gels on the rectal mucosal proteome and microbiome in non-human primates, Scientific reports. 2018 May 23

Eisenman DJ, Raghavan P, Hertzano R, Morales R

Evaluation and treatment of pulsatile tinnitus associated with sigmoid sinus wall anomalies, The Laryngoscope. 2018 May 14

Chia CW, Shardell M, Gravenstein KS, Carlson OD, Simonsick EM, Ferrucci L, Egan JM

Regular low-calorie sweetener consumption is associated with increased secretion of glucose-dependent insulinotropic polypeptide, Diabetes, obesity & metabolism. 2018 May 09

Zhang Y, Brady A, Jones C, Song Y, Darton TC, Jones C, Blohmke CJ, Pollard AJ, Magder LS, Fasano A, Sztein MB, Fraser CM

Compositional and Functional Differences in the Human Gut Microbiome Correlate with Clinical Outcome following Infection with Wild-Type Salmonella enterica Serovar Typhi, mBio. 2018 May 08

Matern MS, Beirl A, Ogawa Y, Song Y, Paladugu N, Kindt KS, Hertzano R

Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag, Frontiers in cell and developmental biology. 2018 May 01

Vincent LR, Kerr SR, Tan Y, Tomberg J, Raterman EL, Dunning Hotopp JC, Unemo M, Nicholas RA, Jerse AE

-Selected Compensatory Mutations Restore the Fitness Cost of Mosaic Alleles That Confer Ceftriaxone Resistance in , mBio. 2018 Apr 03

Casjens SR, Di L, Akther S, Mongodin EF, Luft BJ, Schutzer SE, Fraser CM, Qiu WG

Primordial origin and diversification of plasmids in Lyme disease agent bacteria, BMC genomics. 2018 Mar 27

Ament SA, Pearl JR, Cantle JP, Bragg RM, Skene PJ, Coffey SR, Bergey DE, Wheeler VC, MacDonald ME, Baliga NS, Rosinski J, Hood LE, Carroll JB, Price ND

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease, Molecular systems biology. 2018 Mar 26

Page GG, Corwin EJ, Dorsey SG, Redeker NS, McCloskey DJ, Austin JK, Guthrie BJ, Moore SM, Barton D, Kim MT, Docherty SL, Waldrop-Valverde D, Bailey DE, Schiffman RF, Starkweather A, Ward TM, Bakken S, Hickey KT, Renn CL, Grady P

Biomarkers as Common Data Elements for Symptom and Self-Management Science, Journal of nursing scholarship : an official publication of Sigma Theta Tau International Honor Society of Nursing. 2018 Mar 25

Rose DR, Yang H, Serena G, Sturgeon C, Ma B, Careaga M, Hughes HK, Angkustsiri K, Rose M, Hertz-Picciotto I, Van de Water J, Hansen RL, Ravel J, Fasano A, Ashwood P

Differential immune responses and microbiota profiles in children with autism spectrum disorders and co-morbid gastrointestinal symptoms, Brain, behavior, and immunity. 2018 Mar 20

Milon B, Mitra S, Song Y, Margulies Z, Casserly R, Drake V, Mong JA, Depireux DA, Hertzano R

The impact of biological sex on the response to noise and otoprotective therapies against acoustic injury in mice, Biology of sex differences. 2018 Mar 12

Bello SM, Shimoyama M, Mitraka E, Laulederkind SJF, Smith CL, Eppig JT, Schriml LM

Disease Ontology: improving and unifying disease annotations across species, Disease models & mechanisms. 2018 Mar 12

Robertson CD, Hazen TH, Kaper JB, Rasko DA, Hansen AM

Phosphotyrosine-Mediated Regulation of Enterohemorrhagic Virulence, mBio. 2018 Feb 27

Rathbun AM, Shardell MD, Stuart EA, Gruber-Baldini AL, Orwig D, Ostir GV, Hicks GE, Hochberg MC, Magaziner J

Persistence of depressive symptoms and gait speed recovery in older adults after hip fracture, International journal of geriatric psychiatry. 2018 Feb 26

Solanki HS, Raja R, Zhavoronkov A, Ozerov IV, Artemov AV, Advani J, Radhakrishnan A, Babu N, Puttamallesh VN, Syed N, Nanjappa V, Subbannayya T, Sahasrabuddhe NA, Patil AH, Prasad TSK, Gaykalova D, Chang X, Sathyendran R, Mathur PP, Rangarajan A, Sidransky D, Pandey A, Izumchenko E, Gowda H, Chatterjee A

Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor, Oncoscience. 2018 Feb 23

Hazen TH, Mettus RT, McElheny CL, Bowler SL, Doi Y, Rasko DA

Draft Genome Sequences of -Containing Enterobacter aerogenes, Citrobacter freundii, and Citrobacter koseri Strains, Genome announcements. 2018 Feb 22

Clough M, Mutimer S, Wright DK, Tsang A, Costello DM, Gardner AJ, Stanwell P, Mychasiuk R, Sun M, Brady RD, McDonald SJ, Webster KM, Johnstone MR, Semple BD, Agoston DV, White OB, Frayne R, Fielding J, O'Brien TJ, Shultz SR

Oculomotor Cognitive Control Abnormalities in Australian Rules Football Players with a History of Concussion, Journal of neurotrauma. 2018 Feb 09

Wang X, Zhao X, Yi Z, Ma B, Wang H, Pu Y, Wang J, Wang S

WNT5A promotes migration and invasion of human osteosarcoma cells via SRC/ERK/MMP-14 pathway, Cell biology international. 2018 Feb 06

Tachedjian G, O'Hanlon DE, Ravel J

The implausible "in vivo" role of hydrogen peroxide as an antimicrobial factor produced by vaginal microbiota, Microbiome. 2018 Feb 06

Sobhanian MJ, Agarwal R, Meltzer E, Kildebeck E, Frohman BS, Frohman AN, Galetta SL, Saidha S, White O, Villoslada P, Paul F, Petzold A, Rennaker RL, Martinez-Lapiscina EH, Balcer LJ, Kardon R, Frohman EM, Frohman TC

Identification and treatment of the visual processing asymmetry in MS patients with optic neuritis: The Pulfrich phenomenon, Journal of the neurological sciences. 2018 Feb 03

Quinn CC, Butler EC, Swasey KK, Shardell MD, Terrin MD, Barr EA, Gruber-Baldini AL

Mobile Diabetes Intervention Study of Patient Engagement and Impact on Blood Glucose: Mixed Methods Analysis, JMIR mHealth and uHealth. 2018 Feb 02

Noyes N, Cho KC, Ravel J, Forney LJ, Abdo Z

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis, PloS one. 2018 Jan 24

Salimi S, Shardell MD, Seliger SL, Bandinelli S, Guralnik JM, Ferrucci L

Inflammation and Trajectory of Renal Function in Community-Dwelling Older Adults, Journal of the American Geriatrics Society. 2018 Jan 23

Goedert JJ, Hua X, Bielecka A, Okayasu I, Milne GL, Jones GS, Fujiwara M, Sinha R, Wan Y, Xu X, Ravel J, Shi J, Palm NW, Feigelson HS

Postmenopausal breast cancer and oestrogen associations with the IgA-coated and IgA-noncoated faecal microbiota, British journal of cancer. 2018 Jan 23

Popovici J, Friedrich LR, Kim S, Bin S, Run V, Lek D, Cannon MV, Menard D, Serre D

Genomic Analyses Reveal the Common Occurrence and Complexity of Relapses in Cambodia, mBio. 2018 Jan 23

Tamarelle J, de Barbeyrac B, Le Hen I, Thiébaut A, Bébéar C, Ravel J, Delarocque-Astagneau E

Vaginal microbiota composition and association with prevalent infection: a cross-sectional study of young women attending a STI clinic in France, Sexually transmitted infections. 2018 Jan 22

Connolly NP, Shetty AC, Stokum JA, Hoeschele I, Siegel MB, Miller CR, Kim AJ, Ho CY, Davila E, Simard JM, Devine SE, Rossmeisl JH, Holland EC, Winkles JA, Woodworth GF

Cross-species transcriptional analysis reveals conserved and host-specific neoplastic processes in mammalian glioma, Scientific reports. 2018 Jan 19

Watkins TN, Liu H, Chung M, Hazen TH, Dunning Hotopp JC, Filler SG, Bruno VM

Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells, Microbial genomics. 2018 Jan 18

Neuwald AF, Aravind L, Altschul SF

Inferring joint sequence-structural determinants of protein functional specificity, eLife. 2018 Jan 16

Langille MGI, Ravel J, Fricke WF

"Available upon request": not good enough for microbiome data!, Microbiome. 2018 Jan 10

Dunning Hotopp JC, Klasson L

The Complexities and Nuances of Analyzing the Genome of and Its Endosymbiont, G3 (Bethesda, Md.). 2018 Jan 04