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Publications - Publications 2017
A retrospective pilot study to determine whether the reproductive tract microbiota differs between women with a history of infertility and fertile women, The Australian & New Zealand journal of obstetrics & gynaecology. 2017 Dec 26
Enterotypes in the landscape of gut microbial community composition, Nature microbiology. 2017 Dec 18
The Impact of a Mobile Diabetes Health Intervention on Diabetes Distress and Depression Among Adults: Secondary Analysis of a Cluster Randomized Controlled Trial, JMIR mHealth and uHealth. 2017 Dec 07
Dynamic Effects of Depressive Symptoms on Osteoarthritis Knee Pain, Arthritis care & research. 2017 Dec 06
Joint mixed-effects models for causal inference with longitudinal data, Statistics in medicine. 2017 Dec 04
Combined allelic dosage of and regulates cortical development, Brain and neuroscience advances. 2017 Nov 22
Clinical course, therapeutic responses and outcomes in relapsing MOG antibody-associated demyelination, Journal of neurology, neurosurgery, and psychiatry. 2017 Nov 15
Isolated Horizontal Gaze Palsy: Observations and Explanations, Frontiers in neurology. 2017 Nov 15
A role for Candida albicans superoxide dismutase enzymes in glucose signaling, Biochemical and biophysical research communications. 2017 Nov 14
Early screening for Chlamydia trachomatis in young women for primary prevention of pelvic inflammatory disease (i-Predict): study protocol for a randomised controlled trial, Trials. 2017 Nov 13
DNA methylation regulates TMEM16A/ANO1 expression through multiple CpG islands in head and neck squamous cell carcinoma, Scientific reports. 2017 Nov 09
Glutamine deficiency induces DNA alkylation damage and sensitizes cancer cells to alkylating agents through inhibition of ALKBH enzymes, PLoS biology. 2017 Nov 06
Characterization of a new, inducible transgenic mouse model with GFP expression in melanocytes and their precursors, Gene expression patterns : GEP. 2017 Oct 21
Dynamic microbial populations along the Cuyahoga River, PloS one. 2017 Oct 19
Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project, Nature. 2017 Oct 12
Susceptibility of different mouse strains to oxaliplatin peripheral neurotoxicity: Phenotypic and genotypic insights, PloS one. 2017 Oct 11
Role of Molecular Biology in Diagnosis and Characterization of Vulvo-Vaginitis in Clinical Practice, Gynecologic and obstetric investigation. 2017 Oct 10
Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium, Nature biotechnology. 2017 Oct 02
Whole-Genome Sequences of Bacteremia Isolates of , Genome announcements. 2017 Sep 28
Clinical Relevance of Gastrointestinal Microbiota During Pregnancy: A Primer for Nurses, Biological research for nursing. 2017 Sep 27
-dominated vaginal microbiota is associated with increased susceptibility to infection in Dutch women: a case-control study, Sexually transmitted infections. 2017 Sep 25
Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks, Cancer research. 2017 Sep 25
Screening, separation, and evaluation of xanthine oxidase inhibitors from Paeonia lactiflora using chromatography combined with a multi-mode microplate reader, Journal of separation science. 2017 Sep 25
Strains, functions and dynamics in the expanded Human Microbiome Project, Nature. 2017 Sep 20
A nickel-phyllosilicate core-echinus catalyst via a green and base additive free hydrothermal approach for hydrogenation reactions, Chemical communications (Cambridge, England). 2017 Sep 11
Burns in a major burns center in East China from 2005 to 2014: Incidence and outcome, Burns : journal of the International Society for Burn Injuries. 2017 Aug 30
The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology, Genome research. 2017 Aug 30
Characterization of a Large Antibiotic Resistance Plasmid Found in Enteropathogenic Escherichia coli Strain B171 and Its Relatedness to Plasmids of Diverse E. coli and Shigella Strains, Antimicrobial agents and chemotherapy. 2017 Aug 24
Lipid Metabolism, Abdominal Adiposity, and Cerebral Health in the Amish, Obesity (Silver Spring, Md.). 2017 Aug 20
Systemic and Terminal Ileum Mucosal Immunity Elicited by Oral Immunization With the Ty21a Typhoid Vaccine in Humans, Cellular and molecular gastroenterology and hepatology. 2017 Aug 16
The AraC Negative Regulator family modulates the activity of histone-like proteins in pathogenic bacteria, PLoS pathogens. 2017 Aug 14
Characterization of P. vivax blood stage transcriptomes from field isolates reveals similarities among infections and complex gene isoforms, Scientific reports. 2017 Aug 10
Initial Cluster Analysis, Journal of computational biology : a journal of computational molecular cell biology. 2017 Aug 03
Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin-producing Escherichia coli strains, Scientific reports. 2017 Aug 01
Transcriptional Variation of Diverse Enteropathogenic Isolates under Virulence-Inducing Conditions, mSystems. 2017 Jul 25
Quantitative Sensory Testing and Current Perception Threshold Testing in Patients With Chronic Pain Following Lower Extremity Fracture, Biological research for nursing. 2017 Jul 24
Oxaliplatin-Induced Peripheral Neuropathy and Identification of Unique Severity Groups in Colorectal Cancer, Journal of pain and symptom management. 2017 Jul 23
A Novel Functional Splice Variant of Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers, Cancer research. 2017 Jul 21
The Language of Glove: Wireless gesture decoder with low-power and stretchable hybrid electronics, PloS one. 2017 Jul 12
Aligner optimization increases accuracy and decreases compute times in multi-species sequence data, Microbial genomics. 2017 Jul 08
Molecular Characterization of the Human Stomach Microbiota in Gastric Cancer Patients, Frontiers in cellular and infection microbiology. 2017 Jul 06
and in the Vaginal Microbiota and Persistent High-Risk Human Papillomavirus Infection, Frontiers in public health. 2017 Jun 26
Patient-reported (EORTC QLQ-CIPN20) versus physician-reported (CTCAE) quantification of oxaliplatin- and paclitaxel/carboplatin-induced peripheral neuropathy in NCCTG/Alliance clinical trials, Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer. 2017 Jun 20
Determinants of seasonal changes in availability of food patches for elephants () in a semi-arid African savanna, PeerJ. 2017 Jun 20
Preparation and in vivo evaluation of a silicate-based composite bone cement, Journal of biomaterials applications. 2017 Jun 16
Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli, Scientific reports. 2017 Jun 14
Long Noncoding RNA GAS5 Suppresses Cell Growth and Epithelial-Mesenchymal Transition in Osteosarcoma by Regulating the miR-221/ARHI Pathway, Journal of cellular biochemistry. 2017 Jun 13
Insights into enterotoxigenic Escherichia coli diversity in Bangladesh utilizing genomic epidemiology, Scientific reports. 2017 Jun 13
Molecular mechanisms of human papillomavirus-related carcinogenesis in head and neck cancer, Microbes and infection. 2017 Jun 12
Analysis of complete genome sequence and major surface antigens of Neorickettsia helminthoeca, causative agent of salmon poisoning disease, Microbial biotechnology. 2017 Jun 06
The Role of Somatic L1 Retrotransposition in Human Cancers, Viruses. 2017 May 31
Development and validation of a Score for Preoperative Prediction of Obstructive Sleep Apnea (SPOSA) and its perioperative outcomes, BMC anesthesiology. 2017 May 30
Analysis of Shigella flexneri Resistance, Biofilm Formation, and Transcriptional Profile in Response to Bile Salts, Infection and immunity. 2017 May 23
analysis of pathways activation landscape in oral squamous cell carcinoma and oral leukoplakia, Cell death discovery. 2017 May 22
Retrospective observational evaluation of postoperative oxygen saturation levels and associated postoperative respiratory complications and hospital resource utilization, PloS one. 2017 May 17
Peripheral huntingtin silencing does not ameliorate central signs of disease in the B6.HttQ111/+ mouse model of Huntington's disease, PloS one. 2017 Apr 28
CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline, BMC genomics. 2017 Apr 27
Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome, Scientific reports. 2017 Apr 21
Facile Fabrication of Composite Membranes with Dual Thermo- and pH-Responsive Characteristics, ACS applied materials & interfaces. 2017 Apr 17
Targeted Enrichment and Sequencing of Recent Endosymbiont-Host Lateral Gene Transfers, Scientific reports. 2017 Apr 12
Gastric microbiota features associated with cancer risk factors and clinical outcomes: A pilot study in gastric cardia cancer patients from Shanxi, China, International journal of cancer. 2017 Apr 03
Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives, Scientific data. 2017 Mar 28
Corrigendum: Motivational, proteostatic and transcriptional deficits precede synapse loss, gliosis and neurodegeneration in the B6.Htt model of Huntington's disease, Scientific reports. 2017 Mar 28
New var reconstruction algorithm exposes high var sequence diversity in a single geographic location in Mali, Genome medicine. 2017 Mar 28
The Aryl Hydrocarbon Receptor Governs Epithelial Cell Invasion during Oropharyngeal Candidiasis, mBio. 2017 Mar 21
A proposed definition of microbiota transplantation for regulatory purposes, Gut microbes. 2017 Mar 20
Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP), Journal of biomolecular techniques : JBT. 2017 Mar 10
Truncated TrkB.T1-Mediated Astrocyte Dysfunction Contributes to Impaired Motor Function and Neuropathic Pain after Spinal Cord Injury, The Journal of neuroscience : the official journal of the Society for Neuroscience. 2017 Mar 07
Behavioral measures of cortical hyperexcitability assessed in people who experience visual snow, Neurology. 2017 Mar 01
Accurate and equitable medical genomic analysis requires an understanding of demography and its influence on sample size and ratio, Genome biology. 2017 Feb 27
Feasibility of Combining Common Data Elements Across Studies to Test a Hypothesis, Journal of nursing scholarship : an official publication of Sigma Theta Tau International Honor Society of Nursing. 2017 Feb 23
Autologous hematopoietic stem cell transplantation in lymphoma patients is associated with a decrease in the double strand break repair capacity of peripheral blood lymphocytes, PloS one. 2017 Feb 16
Plasmid diversity and phylogenetic consistency in the Lyme disease agent Borrelia burgdorferi, BMC genomics. 2017 Feb 15
Early body composition, but not body mass, is associated with future accelerated decline in muscle quality, Journal of cachexia, sarcopenia and muscle. 2017 Feb 14
Gfi1 mice have early onset progressive hearing loss and induce recombination in numerous inner ear non-hair cells, Scientific reports. 2017 Feb 09
Lateral gene transfer between prokaryotes and eukaryotes, Experimental cell research. 2017 Feb 09
Muscle strength mediates the relationship between mitochondrial energetics and walking performance, Aging cell. 2017 Feb 09
3D-Printed Bioactive CaSiO Bone Cement Scaffolds with Nano Surface Structure for Bone Regeneration, ACS applied materials & interfaces. 2017 Feb 08
Motivational, proteostatic and transcriptional deficits precede synapse loss, gliosis and neurodegeneration in the B6.Htt model of Huntington's disease, Scientific reports. 2017 Feb 08
Planning for the Maintenance of Floristic Diversity in the Face of Land Cover and Climate Change, Environmental management. 2017 Feb 04
DNA Advanced Glycation End Products (DNA-AGEs) Are Elevated in Urine and Tissue in an Animal Model of Type 2 Diabetes, Chemical research in toxicology. 2017 Feb 03
Intestinal Barrier Maturation in Very Low Birthweight Infants: Relationship to Feeding and Antibiotic Exposure, The Journal of pediatrics. 2017 Jan 31
Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data, Microbiome. 2017 Jan 25
Effects of transdermal testosterone gel or an aromatase inhibitor on serum concentration and pulsatility of growth hormone in older men with age-related low testosterone, Metabolism: clinical and experimental. 2017 Jan 19
Environmental Enteric Dysfunction is Associated with Carnitine Deficiency and Altered Fatty Acid Oxidation, EBioMedicine. 2017 Jan 18
The effect of cigarette smoking on the oral and nasal microbiota, Microbiome. 2017 Jan 17
Synthesis and structure-activity relationship studies of phenolic hydroxyl derivatives based on quinoxalinone as aldose reductase inhibitors with antioxidant activity, Bioorganic & medicinal chemistry letters. 2017 Jan 11
Chaperone-Usher Pili Loci of Colonization Factor-Negative Human Enterotoxigenic , Frontiers in cellular and infection microbiology. 2017 Jan 06