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Publications - Publications 2013
CotH3 mediates fungal invasion of host cells during mucormycosis, The Journal of clinical investigation. 2013 Dec 20
Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces (Pseudogymnoascus) destructans, Genome announcements. 2013 Dec 19
Anal microbiota profiles in HIV-positive and HIV-negative MSM, AIDS (London, England). 2013 Dec 11
Genetic variation in vitro and in vivo of an attenuated Lassa vaccine candidate, Journal of virology. 2013 Dec 11
Simultaneous transcriptional profiling of bacteria and their host cells, PloS one. 2013 Dec 04
Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection, PloS one. 2013 Nov 26
Genetic architecture of quantitative traits and complex diseases, Current opinion in genetics & development. 2013 Nov 26
Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions, Nature reviews. Genetics. 2013 Nov 26
Enterotoxigenic Escherichia coli secrete a highly conserved mucin-degrading metalloprotease to effectively engage intestinal epithelial cells, Infection and immunity. 2013 Nov 18
MetaRef: a pan-genomic database for comparative and community microbial genomics, Nucleic acids research. 2013 Nov 06
A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis-specific lipid A, Molecular microbiology. 2013 Nov 06
MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment, The ISME journal. 2013 Oct 24
Association between the vaginal microbiota, menopause status, and signs of vulvovaginal atrophy, Menopause (New York, N.Y.). 2013 Oct 21
Characterizing the Temporal Dynamics of Human Papillomavirus DNA Detectability Using Short-Interval Sampling, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2013 Oct 15
Microbiome, sex hormones, and immune responses in the reproductive tract: Challenges for vaccine development against sexually transmitted infections, Vaccine. 2013 Oct 14
Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation, BMC genomics. 2013 Oct 10
Characterization of the Bacterial Community of the Chemically Defended Hawaiian Sacoglossan Elysia rufescens, Applied and environmental microbiology. 2013 Sep 06
Inhibitory saccadic dysfunction is associated with cerebellar injury in multiple sclerosis, Human brain mapping. 2013 Sep 03
Cortical negative motor network in comparison with sensorimotor network: a cortico-cortical evoked potential study, Cortex; a journal devoted to the study of the nervous system and behavior. 2013 Aug 26
In vitro evolution of an archetypal enteropathogenic Escherichia coli strain, Journal of bacteriology. 2013 Aug 02
Evolutionary Modeling of Genotype-Phenotype Associations, and Application to Primate Coding and Non-coding mtDNA Rate Variation, Evolutionary bioinformatics online. 2013 Jul 28
Menstrual Cycle and Detectable Human Papillomavirus in Reproductive-age Women: A Time Series Study, The Journal of infectious diseases. 2013 Jul 24
Genus-optimized strategy for the identification of chlamydial type III secretion substrates, Pathogens and disease. 2013 Jul 19
Draft Genome Sequences of Three O157 Enteropathogenic Escherichia coli Isolates, Genome announcements. 2013 Jul 18
Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli, Proceedings of the National Academy of Sciences of the United States of America. 2013 Jul 15
Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis, Viruses. 2013 Jul 08
Fine-scale patterns of population stratification confound rare variant association tests, PloS one. 2013 Jul 04
Great ape genetic diversity and population history, Nature. 2013 Jul 03
Draft genome sequences of five recent human uropathogenic Escherichia coli isolates, Pathogens and disease. 2013 Jul 02
Are changes to the common rule necessary to address evolving areas of research? A case study focusing on the human microbiome project, The Journal of law, medicine & ethics : a journal of the American Society of Law, Medicine & Ethics. 2013 Jun 27
Utilizing transcriptomics to identify mediators of pathogenesis in Shigella flexneri: characterization of intracellular growth regulator, icgR, Infection and immunity. 2013 Jun 10
Defining the RGG/RG Motif, Molecular cell. 2013 Jun 10
Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells, BMC genomics. 2013 Jun 09
Differential response of the cynomolgus macaque gut microbiota to Shigella infection, PloS one. 2013 Jun 05
Genome sequences of 65 Helicobacter pylori strains isolated from asymptomatic individuals and patients with gastric cancer, peptic ulcer disease, or gastritis, Pathogens and disease. 2013 May 23
Genome Sequence of Salmonella enterica Serotype Tennessee Strain CDC07-0191, Implicated in the 2006-2007 Multistate Food-Borne Outbreak Linked to Peanut Butter in the United States, Genome announcements. 2013 May 23
Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses, PloS one. 2013 Apr 24
Male circumcision significantly reduces prevalence and load of genital anaerobic bacteria, mBio. 2013 Apr 16
Gut microbiota, tight junction protein expression, intestinal resistance, bacterial translocation and mortality following cholestasis depend on the genetic background of the host, Gut microbes. 2013 Apr 15
Regulation of copper toxicity by Candida albicans GPA2, Eukaryotic cell. 2013 Apr 12
Regulatory Role of Glycerol in Candida albicans Biofilm Formation, mBio. 2013 Apr 09
Differential expression analysis for paired RNA-seq data, BMC bioinformatics. 2013 Mar 27
Quantitative Polymerase Chain Reaction for Detection of Shigella Improves Ascertainment of Shigella Burden in Children with Moderate to Severe Diarrhea in Low Income Countries, Journal of clinical microbiology. 2013 Mar 27
Genomics of Loa loa, a Wolbachia-free filarial parasite of humans, Nature genetics. 2013 Mar 24
Significant changes in the skin microbiome mediated by the sport of roller derby, PeerJ. 2013 Mar 12
Immune status, antibiotic medication and pH are associated with changes in the stomach fluid microbiota, The ISME journal. 2013 Mar 07
Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains, Genome announcements. 2013 Feb 28
CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota, Microbiome. 2013 Feb 04
Draft Genome Sequence of the Methicillin-Resistant Staphylococcus aureus Isolate MRSA-M2, Genome announcements. 2013 Jan 31
Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1, Genome announcements. 2013 Jan 31
The human microbiome: from symbiosis to pathogenesis, Annual review of medicine. 2013 Jan 18
Reorganization of posterior language area in temporal lobe epilepsy: a cortico-cortical evoked potential study, Epilepsy research. 2013 Jan 11
Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants, Nature. 2013 Jan 10
Microbiome, demystifying the role of microbial communities in the biosphere, Microbiome. 2013 Jan 09