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Publications - Publications 2014
Host-specific induction of Escherichia coli fitness genes during human urinary tract infection, Proceedings of the National Academy of Sciences of the United States of America. 2014 Dec 08
An ontology for microbial phenotypes, BMC microbiology. 2014 Nov 30
Rare variation facilitates inferences of fine-scale population structure in humans, Molecular biology and evolution. 2014 Nov 21
QseC Inhibitors as an Antivirulence Approach for Gram-Negative Pathogens, mBio. 2014 Nov 11
Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution, Nature genetics. 2014 Nov 10
Genomic epidemiology of the haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic, mBio. 2014 Nov 04
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data, Nucleic acids research. 2014 Oct 27
Advancing the microbiome research community, Cell. 2014 Oct 11
An Effective Intervention to Reduce Intravaginal Practices Among HIV-1 Uninfected Kenyan Women, AIDS research and human retroviruses. 2014 Sep 29
Movement planning and online control in multiple sclerosis: assessment using a fitts law reciprocal aiming task, Cognitive and behavioral neurology : official journal of the Society for Behavioral and Cognitive Neurology. 2014 Sep 20
Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest, Proceedings of the National Academy of Sciences of the United States of America. 2014 Sep 15
Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis, BMC genomics. 2014 Sep 12
Associations of the Fecal Microbiome With Urinary Estrogens and Estrogen Metabolites in Postmenopausal Women, The Journal of clinical endocrinology and metabolism. 2014 Sep 11
Creating and validating cis-regulatory maps of tissue-specific gene expression regulation, Nucleic acids research. 2014 Sep 08
Disruption of the Transcriptional Regulator Cas5 Results in Enhanced Killing of Candida albicans by Fluconazole, Antimicrobial agents and chemotherapy. 2014 Sep 02
Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys, BMC genomics. 2014 Aug 29
Association between cigarette smoking and the vaginal microbiota: a pilot study, BMC infectious diseases. 2014 Aug 28
Probiotics: achieving a better regulatory fit, Food and drug law journal. 2014 Aug 28
TGFbeta Induces 'BRCAness' and Sensitivity to PARP Inhibition in Breast Cancer by Regulating DNA Repair Genes, Molecular cancer research : MCR. 2014 Aug 07
Mobile Diabetes Intervention for Glycemic Control in 45- to 64-Year-Old Persons With Type 2 Diabetes, Journal of applied gerontology : the official journal of the Southern Gerontological Society. 2014 Aug 06
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains, PLoS biology. 2014 Aug 05
Prediction of treatment week eight response & sustained virologic response in patients treated with boceprevir plus peginterferon alfa and ribavirin, PloS one. 2014 Aug 01
Circleator: Flexible Circular Visualization of Genome-Associated Data with BioPerl and SVG, Bioinformatics (Oxford, England). 2014 Jul 29
Erratum for Yeruva et al., Early MicroRNA Expression Profile as a Prognostic Biomarker for the Development of Pelvic Inflammatory Disease in a Mouse Model of Chlamydial Genital Infection, mBio. 2014 Jul 29
Whole Genome Assembly of Klebsiella pneumoniae Co-Producing NDM-1 and OXA-232 Carbapenemases Using Single-Molecule, Real-Time Sequencing, Antimicrobial agents and chemotherapy. 2014 Jul 28
Standardized description of scientific evidence using the Evidence Ontology (ECO), Database : the journal of biological databases and curation. 2014 Jul 22
Phylogeography of Bacillus anthracis in the Country of Georgia Shows Evidence of Population Structuring and Is Dissimilar to Other Regional Genotypes, PloS one. 2014 Jul 21
Free Glycogen in Vaginal Fluids Is Associated with Lactobacillus Colonization and Low Vaginal pH, PloS one. 2014 Jul 17
Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems, International journal of food microbiology. 2014 Jul 11
BorreliaBase: a phylogeny-centered browser of Borrelia genomes, BMC bioinformatics. 2014 Jul 03
Protein domain hierarchy Gibbs sampling strategies, Statistical applications in genetics and molecular biology. 2014 Jul 02
Concurrent motor and cognitive function in multiple sclerosis: a motor overflow and motor stability study, Cognitive and behavioral neurology : official journal of the Society for Behavioral and Cognitive Neurology. 2014 Jun 27
Early microRNA expression profile as a prognostic biomarker for the development of pelvic inflammatory disease in a mouse model of chlamydial genital infection, mBio. 2014 Jun 24
Hepatic Decompensation in Patients With HIV/Hepatitis B Virus (HBV)/Hepatitis C Virus (HCV) Triple Infection Versus HIV/HCV Coinfection and the Effect of Anti-HBV Nucleos(t)ide Therapy, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2014 Jun 18
Interplay Between the Temporal Dynamics of the Vaginal Microbiota and Human Papillomavirus Detection, The Journal of infectious diseases. 2014 Jun 18
Standardized metadata for human pathogen/vector genomic sequences, PloS one. 2014 Jun 17
Draft Genome Sequences of Nine Enteropathogenic Escherichia coli Strains from Kenya, Genome announcements. 2014 Jun 12
Comparative Genomics of an IncA/C Multidrug Resistance Plasmid from Escherichia coli and Klebsiella Isolates from Intensive Care Unit Patients and the Utility of Whole-Genome Sequencing in Health Care Settings, Antimicrobial agents and chemotherapy. 2014 Jun 09
The potential role of lung microbiota in lung cancer attributed to household coal burning exposures, Environmental and molecular mutagenesis. 2014 Jun 03
AB5075, a Highly Virulent Isolate of Acinetobacter baumannii, as a Model Strain for the Evaluation of Pathogenesis and Antimicrobial Treatments, mBio. 2014 May 27
The vaginal microbiota of pregnant women who subsequently have spontaneous preterm labor and delivery and those with a normal delivery at term, Microbiome. 2014 May 27
Culture-independent evaluation of the appendix and rectum microbiomes in children with and without appendicitis, PloS one. 2014 Apr 23
Saccade reprogramming in Friedreich ataxia reveals impairments in the cognitive control of saccadic eye movement, Brain and cognition. 2014 Apr 19
Correction: The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women, Microbiome. 2014 Apr 15
Feasibility of self-collection of fecal specimens by randomly sampled women for health-related studies of the gut microbiome, BMC research notes. 2014 Apr 01
The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes, PeerJ. 2014 Apr 01
Role of inflammatory markers in Takayasu arteritis disease monitoring, BMC neurology. 2014 Mar 28
Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies, Genome announcements. 2014 Mar 27
Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies, Genome announcements. 2014 Mar 27
Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies, Genome announcements. 2014 Mar 27
Human type I pancreatic elastase treatment of arteriovenous fistulas in patients with chronic kidney disease, Journal of vascular surgery. 2014 Mar 27
Granulocytes affect double-strand break repair assays in primary human lymphocytes, PloS one. 2014 Mar 25
Integration of culture-based and molecular analysis of a complex sponge-associated bacterial community, PloS one. 2014 Mar 11
All hail reproducibility in microbiome research, Microbiome. 2014 Mar 07
Bacterial communities on classroom surfaces vary with human contact, Microbiome. 2014 Mar 07
High-level Relatedness among Mycobacterium abscessus subsp. massiliense Strains from Widely Separated Outbreaks, Emerging infectious diseases. 2014 Feb 25
An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform, Microbiome. 2014 Feb 24
Evaluating, Comparing, and Interpreting Protein Domain Hierarchies, Journal of computational biology : a journal of computational molecular cell biology. 2014 Feb 21
High Frequency, Spontaneous motA Mutations in Campylobacter jejuni Strain 81-176, PloS one. 2014 Feb 18
Genomic standards consortium projects, Standards in genomic sciences. 2014 Feb 15
A Bayesian Sampler for Optimization of Protein Domain Hierarchies, Journal of computational biology : a journal of computational molecular cell biology. 2014 Feb 04
The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women, Microbiome. 2014 Feb 03
Enterotoxigenic Escherichia coli Secretes a Highly Conserved Mucin-Degrading Metalloprotease To Effectively Engage Intestinal Epithelial Cells, Infection and immunity. 2014 Jan 30
Architectural design drives the biogeography of indoor bacterial communities, PloS one. 2014 Jan 29
Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842, Genome announcements. 2014 Jan 23
H-NST Induces LEE Expression and the Formation of Attaching and Effacing Lesions in Enterohemorrhagic Escherichia coli, PloS one. 2014 Jan 21
Thank you to Microbiome's peer reviewers in 2013, Microbiome. 2014 Jan 20
Soil Aggregates and Associated Organic Matter under Conventional Tillage, No-Tillage, and Forest Succession after Three Decades, PloS one. 2014 Jan 20
Efficacy of Combined Jejunal and Colonic Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection, Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. 2014 Jan 16
Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes, BMC genomics. 2014 Jan 14
Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States, Genome announcements. 2014 Jan 09
Draft Genome Sequence of Synechococcus sp. Strain CB0101, Isolated From the Chesapeake Bay Estuary, Genome announcements. 2014 Jan 09
Characterization of Klebsiella sp. 10982, a colonizer of humans that contains novel antibiotic resistance alleles and exhibits genetic similarities to plant and clinical Klebsiella isolates, Antimicrobial agents and chemotherapy. 2014 Jan 06