Publications - Publications 2011

Hiller NL, Eutsey RA, Powell E, Earl JP, Janto B, Martin DP, Dawid S, Ahmed A, Longwell MJ, Dahlgren ME, Ezzo S, Tettelin H, Daugherty SC, Mitchell TJ, Hillman TA, Buchinsky FJ, Tomasz A, Lencastre H, Sá-Leão R, Post JC, Hu FZ, Ehrlich GD

Differences in genotype and virulence among four multidrug-resistant Streptococcus pneumoniae isolates belonging to the PMEN1 clone, PloS one. 2011 Dec 19

Reis VO, Silva JC, Souza GT, Semedo P, Buscariollo B, Pereira RL, Cenedeze MA, Pacheco-Silva A, Longo-Maugéri IM, Câmara NO, Keller AC

The polysaccharide fraction of Propionibacterium acnes modulates the development of experimental focal segmental glomerulosclerosis, Immunobiology. 2011 Dec 16

Ferdinands JM, Denison AM, Dowling NF, Jost HA, Gwinn ML, Liu L, Zaki SR, Shay DK

A pilot study of host genetic variants associated with influenza-associated deaths among children and young adults, Emerging infectious diseases. 2011 Dec 16

Costa DG, Marvulo MF, Silva JS, Santana SC, Magalhães FJ, Lima Filho CD, Ribeiro VO, Alves LC, Mota RA, Dubey JP, Silva JC

Seroprevalence of Toxoplasma gondii in Domestic and Wild Animals From the Fernando De Noronha, Brazil, The Journal of parasitology. 2011 Dec 12

Sanchez CJ, Kumar N, Lizcano A, Shivshankar P, Dunning Hotopp JC, Jorgensen JH, Tettelin H, Orihuela CJ

Streptococcus pneumoniae in biofilms are unable to cause invasive disease due to altered virulence determinant production, PloS one. 2011 Dec 08

Brotman RM

Vaginal microbiome and sexually transmitted infections: an epidemiologic perspective, The Journal of clinical investigation. 2011 Dec 01

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA

Genomic anatomy of Escherichia coli O157:H7 outbreaks, Proceedings of the National Academy of Sciences of the United States of America. 2011 Nov 30

Furtado JM, Lansingh VC, Carter MJ, Milanese MF, Peña BN, Ghersi HA, Bote PL, Nano ME, Silva JC

Causes of Blindness and Visual Impairment in Latin America, Survey of ophthalmology. 2011 Nov 30

Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R

Moving pictures of the human microbiome, Genome biology. 2011 Nov 29

Khoury MJ, Gwinn M, Clyne M, Yu W

Genetic epidemiology with a capital E, ten years after, Genetic epidemiology. 2011 Nov 29

Casjens SR, Mongodin EF, Qiu WG, Dunn JJ, Luft BJ, Fraser-Liggett CM, Schutzer SE

Whole-genome sequences of two Borrelia afzelii and two Borrelia garinii Lyme disease agent isolates, Journal of bacteriology. 2011 Nov 29

Donia MS, Fricke WF, Partensky F, Cox J, Elshahawi SI, White JR, Phillippy AM, Schatz MC, Piel J, Haygood MG, Ravel J, Schmidt EW

Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis, Proceedings of the National Academy of Sciences of the United States of America. 2011 Nov 28

Cantarel BL, Erickson AR, VerBerkmoes NC, Erickson BK, Carey PA, Pan C, Shah M, Mongodin EF, Jansson JK, Fraser-Liggett CM, Hettich RL

Strategies for metagenomic-guided whole-community proteomics of complex microbial environments, PloS one. 2011 Nov 23

Santos AM, Schechtman D, Cardoso AC, Clemente CF, Silva JC, Fioramonte M, Pereira MB, Marin TM, Oliveira PS, Figueira AC, Oliveira SH, Torriani ÍL, Gozzo FC, Xavier Neto J, Franchini KG

FERM domain interaction with myosin negatively regulates FAK in cardiomyocyte hypertrophy, Nature chemical biology. 2011 Nov 20

Han A, Zenilman JM, Melendez JH, Shirtliff ME, Agostinho A, James G, Stewart PS, Mongodin EF, Rao D, Rickard AH, Lazarus GS

The importance of a multifaceted approach to characterizing the microbial flora of chronic wounds, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society. 2011 Nov 18

Khoury MJ, Gwinn M, Bowen MS, Dotson WD

Beyond Base Pairs to Bedside: A Population Perspective on How Genomics Can Improve Health, American journal of public health. 2011 Nov 17

Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources, Nucleic acids research. 2011 Nov 12

Schriml LM, Arze C, Nadendla S, Chang YW, Mazaitis M, Felix V, Feng G, Kibbe WA

Disease Ontology: a backbone for disease semantic integration, Nucleic acids research. 2011 Nov 12

Theunissen TW, Costa Y, Radzisheuskaya A, van Oosten AL, Lavial F, Pain B, Castro LF, Silva JC

Reprogramming capacity of Nanog is functionally conserved in vertebrates and resides in a unique homeodomain, Development (Cambridge, England). 2011 Oct 26

Angiuoli SV, White JR, Matalka M, White O, Fricke WF

Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing, PloS one. 2011 Oct 19

Silva JC, Borges JC, Cyr DM, Ramos CH, Torriani IL

Central domain deletions affect the SAXS solution structure and function of yeast Hsp40 proteins Sis1 and Ydj1, BMC structural biology. 2011 Oct 19

Carter MJ, Limburg H, Lansingh VC, Silva JC, Resnikoff S

Do gender inequities exist in cataract surgical coverage? Meta-analysis in Latin America, Clinical & experimental ophthalmology. 2011 Oct 17

Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR

Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels, The Journal of biological chemistry. 2011 Oct 10

Liu Z, Hsiao W, Cantarel BL, Drábek EF, Fraser-Liggett C

Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data, Bioinformatics (Oxford, England). 2011 Oct 07

Bishop AC, Sun T, Johnson ME, Bruno VM, Patton-Vogt J

Robust utilization of phospholipase-generated metabolites, glycerophosphodiesters, by Candida albicans: role of the CaGit1 permease, Eukaryotic cell. 2011 Oct 07

Kendall MM, Gruber CC, Rasko DA, Hughes DT, Sperandio V

Hfq virulence regulation in enterohemorrhagic Escherichia coli O157:H7 strain 86-24, Journal of bacteriology. 2011 Oct 07

Khoury MJ, Gwinn M, Dotson WD, Bowen MS

Is there a need for PGxceptionalism?, Genetics in medicine : official journal of the American College of Medical Genetics. 2011 Oct 07

Moreno N, Silva JC, Andrade A

Complicated transcatheter closure of postinfarction ventricular acute septal defect, The Journal of invasive cardiology. 2011 Oct 05

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH

BioCreative III interactive task: an overview, BMC bioinformatics. 2011 Oct 03

Klimke W, O'Donovan C, White O, Brister JR, Clark K, Fedorov B, Mizrachi I, Pruitt KD, Tatusova T

Solving the Problem: Genome Annotation Standards before the Data Deluge, Standards in genomic sciences. 2011 Oct 01

Albuquerque PC, Aguiar JL, Santos SM, Pontes Filho N, Mello RJ, Costa ML, Albuquerque CM, Almeida TM, Santos AH, Silva JC

Comparative study of the areas of osteochondral defects produced in the femoral condyles of rabbits treated with gel of sugarcane biopolymer, Acta cirúrgica brasileira / Sociedade Brasileira para Desenvolvimento Pesquisa em Cirurgia. 2011 Sep 29

Du Y, Derewacz DK, Deguire SM, Teske J, Ravel J, Sulikowski GA, Bachmann BO

Biosynthesis of the Apoptolidins in Nocardiopsis sp. FU 40, Tetrahedron. 2011 Sep 27

Bessen DE, Kumar N, Hall GS, Riley DR, Luo F, Lizano S, Ford CN, McShan WM, Nguyen SV, Hotopp JC, Tettelin H

Whole-genome association study on tissue tropism phenotypes in group A Streptococcus, Journal of bacteriology. 2011 Sep 23

Marine R, Polson SW, Ravel J, Hatfull G, Russell D, Sullivan M, Syed F, Dumas M, Wommack KE

Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA, Applied and environmental microbiology. 2011 Sep 23

Dumas MD, Polson SW, Ritter D, Ravel J, Gelb J, Morgan R, Wommack KE

Impacts of poultry house environment on poultry litter bacterial community composition, PloS one. 2011 Sep 16

Da Silva JC, Rocha WR

C-H bond activation of methane in aqueous solution: a hybrid quantum mechanical/effective fragment potential study, Journal of computational chemistry. 2011 Sep 15

Silva GP, Nascimento AL, Michelazzo D, Alves Junior FF, Rocha MG, Silva JC, Reis FJ, Nogueira AA, Poli Neto OB

High prevalence of chronic pelvic pain in women in Ribeirão Preto, Brazil and direct association with abdominal surgery, Clinics (São Paulo, Brazil). 2011 Sep 14

da Silva LP, da Silva JC

Study on the effects of intermolecular interactions on firefly multicolor bioluminescence, Chemphyschem : a European journal of chemical physics and physical chemistry. 2011 Sep 14

Vogler AJ, Chan F, Wagner DM, Roumagnac P, Lee J, Nera R, Eppinger M, Ravel J, Rahalison L, Rasoamanana BW, Beckstrom-Sternberg SM, Achtman M, Chanteau S, Keim P

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar, PLoS neglected tropical diseases. 2011 Sep 13

Haven J, Vargas LC, Mongodin EF, Xue V, Hernandez Y, Pagan P, Fraser-Liggett CM, Schutzer SE, Luft BJ, Casjens SR, Qiu WG

Pervasive recombination and sympatric genome diversification driven by frequency-dependent selection in Borrelia burgdorferi, the Lyme disease bacterium, Genetics. 2011 Sep 02

Angiuoli SV, Matalka M, Gussman A, Galens K, Vangala M, Riley DR, Arze C, White JR, White O, Fricke WF

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing, BMC bioinformatics. 2011 Aug 30

Bispo CG, Tortamano IP, Rocha RG, Francischone CE, Borsatti MA, da Silva JC, Medeiros AC

Cardiovascular responses to different stages of restorative dental treatment unaffected by local anaesthetic type, Australian dental journal. 2011 Aug 11

Gwinn MR, DeVoney D, Jarabek AM, Sonawane B, Wheeler J, Weissman DN, Masten S, Thompson C

Meeting report: mode(s) of action of asbestos and related mineral fibers, Environmental health perspectives. 2011 Aug 01

Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany, The New England journal of medicine. 2011 Jul 27

Munro JB, Silva JC

Ribonucleotide reductase as a target to control apicomplexan diseases, Current issues in molecular biology. 2011 Jul 26

Barata RA, Silva JC, Silva JC, Almeida SN, Teixeira Lde A, Dias ES

[Control of visceral leishmaniasis in the town of Porteirinha, state of Minas Gerais, Brazil, from 1998 to 2003], Revista da Sociedade Brasileira de Medicina Tropical. 2011 Jul 22

Silva JC, Gasparetto EL, André C

Cognitive and neuroimaging profile of a Brazilian family with CADASIL, Arquivos de neuro-psiquiatria. 2011 Jul 14

Yang Q, Liu T, Kuklina EV, Flanders WD, Hong Y, Gillespie C, Chang MH, Gwinn M, Dowling N, Khoury MJ, Hu FB

Sodium and potassium intake and mortality among US adults: prospective data from the Third National Health and Nutrition Examination Survey, Archives of internal medicine. 2011 Jul 12

Zan J, Fricke WF, Fuqua C, Ravel J, Hill RT

Genome sequence of Ruegeria sp. strain KLH11, an N-acylhomoserine lactone-producing bacterium isolated from the marine sponge Mycale laxissima, Journal of bacteriology. 2011 Jul 08

Rivarola M, Foster JT, Chan AP, Williams AL, Rice DW, Liu X, Melake-Berhan A, Huot Creasy H, Puiu D, Rosovitz MJ, Khouri HM, Beckstrom-Sternberg SM, Allan GJ, Keim P, Ravel J, Rabinowicz PD

Castor bean organelle genome sequencing and worldwide genetic diversity analysis, PloS one. 2011 Jul 07

Winthrop KL, Furtado JM, Silva JC, Resnikoff S, Lansingh VC

River blindness: an old disease on the brink of elimination and control, Journal of global infectious diseases. 2011 Jul 06

Lebreiro AM, Silva JC

Transcatheter closure of an iatrogenic aorto-right ventricular fistula, Catheterization and cardiovascular interventions : official journal of the Society for Cardiac Angiography & Interventions. 2011 Jul 06

Theunissen TW, Silva JC

Switching on pluripotency: a perspective on the biological requirement of Nanog, Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 2011 Jul 05

de Moraes EP, da Costa MM, Dantas AF, da Silva JC, Mota RA

Toxoplasma gondii diagnosis in ovine aborted fetuses and stillborns in the State of Pernambuco, Brazil, Veterinary parasitology. 2011 Jun 30

Angiuoli SV, Dunning Hotopp JC, Salzberg SL, Tettelin H

Improving pan-genome annotation using whole genome multiple alignment, BMC bioinformatics. 2011 Jun 30

Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Methé BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Glöckner FO

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications, Nature biotechnology. 2011 Jun 27

Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS

Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319, Journal of bacteriology. 2011 Jun 24

Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P, Garrity GM, Gilbert J, Glöckner FO, Hirschman L, Karsch-Mizrachi I, Klenk HP, Knight R, Kottmann R, Kyrpides N, Meyer F, San Gil I, Sansone SA, Schriml LM, Sterk P, Tatusova T, Ussery DW, White O, Wooley J

The Genomic Standards Consortium, PLoS biology. 2011 Jun 21

Collingro A, Tischler P, Weinmaier T, Penz T, Heinz E, Brunham RC, Read TD, Bavoil PM, Sachse K, Kahane S, Friedman MG, Rattei T, Myers GS, Horn M

Unity in variety--the pan-genome of the Chlamydiae, Molecular biology and evolution. 2011 Jun 20

Santos PS, Albuquerque GR, da Silva VM, Martin AR, Marvulo MF, Souza SL, Ragozo AM, Nascimento CC, Gennari SM, Dubey JP, Silva JC

Seroprevalence of Toxoplasma gondii in free-living Amazon River dolphins (Inia geoffrensis) from central Amazon, Brazil, Veterinary parasitology. 2011 Jun 12

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of genetic risk prediction studies (GRIPS): explanation and elaboration, European journal of human genetics : EJHG. 2011 Jun 09

Sahl JW, Johnson JK, Harris AD, Phillippy AM, Hsiao WW, Thom KA, Rasko DA

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity, BMC genomics. 2011 Jun 04

Da Silva LP, Da Silva JC

Theoretical modulation of the color of light emitted by firefly oxyluciferin, Journal of computational chemistry. 2011 Jun 02

Henderson T, Georgiou-Karistianis N, White O, Millist L, Williams DR, Churchyard A, Fielding J

Inhibitory control during smooth pursuit in Parkinson's disease and Huntington's disease, Movement disorders : official journal of the Movement Disorder Society. 2011 May 31

Grinblat-Huse V, Drabek EF, Creasy HH, Daugherty SC, Jones KM, Santana-Cruz I, Tallon LJ, Read TD, Hatch TP, Bavoil P, Myers GS

Genome sequences of the zoonotic pathogens Chlamydia psittaci 6BC and Cal10, Journal of bacteriology. 2011 May 27

Yu W, Yesupriya A, Wulf A, Hindorff LA, Dowling N, Khoury MJ, Gwinn M

GWAS Integrator: a bioinformatics tool to explore human genetic associations reported in published genome-wide association studies, European journal of human genetics : EJHG. 2011 May 25

Leitão JM, Tauler R, da Silva JC

Chemometric analysis of excitation emission matrices of fluorescent nanocomposites, Journal of fluorescence. 2011 May 24

Fricke WF, Mammel MK, McDermott PF, Tartera C, White DG, Leclerc JE, Ravel J, Cebula TA

Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution, Journal of bacteriology. 2011 May 20

Mojica S, Huot Creasy H, Daugherty S, Read TD, Kim T, Kaltenboeck B, Bavoil P, Myers GS

Genome sequence of the obligate intracellular animal pathogen Chlamydia pecorum E58, Journal of bacteriology. 2011 May 13

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of genetic risk prediction studies (GRIPS): explanation and elaboration, European journal of epidemiology. 2011 May 06

Vidal CH, Silva JC, Souza JJ, Bernardino SP, Ferreira ML

Radicular dysfunction preponderance at early phase clinical evaluation in myelitis by Schistosoma mansoni, Arquivos de neuro-psiquiatria. 2011 May 03

Fortes BC, Dotta G, Copês RM, Valentini R, Silva JC, Monticielo OA

Pachydermoperiostosis associated with gastric neoplasia, Revista da Associação Médica Brasileira (1992). 2011 May 03

Gwinn MR

Multiple modes of action of asbestos and related mineral fibers, Journal of toxicology and environmental health. Part B, Critical reviews. 2011 May 02

Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kües U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, Quesneville H, Rouhier N, Sakthikumar S, Salamov AA, Schmutz J, Selles B, Shapiro H, Tanguay P, Tuskan GA, Henrissat B, Van de Peer Y, Rouzé P, Ellis JG, Dodds PN, Schein JE, Zhong S, Hamelin RC, Grigoriev IV, Szabo LJ, Martin F

Obligate biotrophy features unraveled by the genomic analysis of rust fungi, Proceedings of the National Academy of Sciences of the United States of America. 2011 May 02

Pelle R, Graham SP, Njahira MN, Osaso J, Saya RM, Odongo DO, Toye PG, Spooner PR, Musoke AJ, Mwangi DM, Taracha EL, Morrison WI, Weir W, Silva JC, Bishop RP

Two Theileria parva CD8 T cell antigen genes are more variable in buffalo than cattle parasites, but differ in pattern of sequence diversity, PloS one. 2011 Apr 29

Galens K, Orvis J, Daugherty S, Creasy HH, Angiuoli S, White O, Wortman J, Mahurkar A, Giglio MG

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation, Standards in genomic sciences. 2011 Apr 25

Brotman RM, Melendez JH, Ghanem KG

A case control study of anovaginal distance and bacterial vaginosis, International journal of STD & AIDS. 2011 Apr 25

Jiménez-Jiménez J, Algarra M, Rodríguez-Castellón E, Jiménez-López A, da Silva JC

Hybrid porous phosphate heterostructures as adsorbents of Hg(II) and Ni(II) from industrial sewage, Journal of hazardous materials. 2011 Apr 07

Papazisi L, Rasko DA, Ratnayake S, Bock GR, Remortel BG, Appalla L, Liu J, Dracheva T, Braisted JC, Shallom S, Jarrahi B, Snesrud E, Ahn S, Sun Q, Rilstone J, Okstad OA, Kolstø AB, Fleischmann RD, Peterson SN

Investigating the genome diversity of B. cereus and evolutionary aspects of B. anthracis emergence, Genomics. 2011 Apr 05

Lee AW, Tettelin H, Chancey S

Genomic Analyses of Clonal Isolates Provide Clues to the Evolution of Streptococcus pneumoniae, Frontiers in microbiology. 2011 Apr 04

Mills RE, Pittard WS, Mullaney JM, Farooq U, Creasy TH, Mahurkar AA, Kemeza DM, Strassler DS, Ponting CP, Webber C, Devine SE

Natural genetic variation caused by small insertions and deletions in the human genome, Genome research. 2011 Apr 01

Zhang Y, Gonçalves H, da Silva JC, Geddes CD

Metal-enhanced photoluminescence from carbon nanodots, Chemical communications (Cambridge, England). 2011 Apr 01

Brave SR, Ratcliffe K, Wilson Z, James NH, Ashton S, Wainwright A, Kendrew J, Dudley P, Broadbent N, Sproat G, Taylor S, Barnes C, Silva JC, Farnsworth CL, Hennequin L, Ogilvie DJ, Jürgensmeier JM, Shibuya M, Wedge SR, Barry ST

Assessing the activity of cediranib, a VEGFR-2/3 tyrosine kinase inhibitor, against VEGFR-1 and members of the structurally related PDGFR family, Molecular cancer therapeutics. 2011 Mar 25

Donia MS, Fricke WF, Ravel J, Schmidt EW

Variation in tropical reef symbiont metagenomes defined by secondary metabolism, PloS one. 2011 Mar 22

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA

Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir, Applied and environmental microbiology. 2011 Mar 18

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of Genetic RIsk Prediction Studies (GRIPS): explanation and elaboration, Journal of clinical epidemiology. 2011 Mar 16

Janssens AC, Ioannidis JP, Bedrosian S, Boffetta P, Dolan SM, Dowling N, Fortier I, Freedman AN, Grimshaw JM, Gulcher J, Gwinn M, Hlatky MA, Janes H, Kraft P, Melillo S, O'Donnell CJ, Pencina MJ, Ransohoff D, Schully SD, Seminara D, Winn DM, Wright CF, van Duijn CM, Little J, Khoury MJ

Strengthening the reporting of genetic risk prediction studies (GRIPS): explanation and elaboration, European journal of clinical investigation. 2011 Mar 15

da Silva LP, da Silva JC

Kinetics of inhibition of firefly luciferase by dehydroluciferyl-coenzyme A, dehydroluciferin and L-luciferin, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology. 2011 Mar 15

Atreya C, Nakhasi H, Mied P, Epstein J, Hughes J, Gwinn M, Kleinman S, Dodd R, Stramer S, Walderhaug M, Ganz P, Goodrich R, Tibbetts C, Asher D

FDA workshop on emerging infectious diseases: evaluating emerging infectious diseases (EIDs) for transfusion safety, Transfusion. 2011 Mar 10

Lopes R, Almeida PB, Amorim MJ, Magalhães D, Silva JC, Pinho P, Maciel MJ

Anomalous origin of the left coronary artery from the pulmonary artery in an asymptomatic adult, Congenital heart disease. 2011 Mar 10

Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, Langham RJ, Decker RS, Jiang L, Read TD, Phillippy AM, Salzberg SL, Pop M, Van Ert MN, Kenefic LJ, Keim PS, Fraser-Liggett CM, Ravel J

Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation, Proceedings of the National Academy of Sciences of the United States of America. 2011 Mar 07

Silva MR, Pedrosa VB, Silva JC, Eler JP, Guimarães JD, Albuquerque LG

Testicular traits as selection criteria for young Nellore bulls, Journal of animal science. 2011 Mar 07

Budroni S, Siena E, Dunning Hotopp JC, Seib KL, Serruto D, Nofroni C, Comanducci M, Riley DR, Daugherty SC, Angiuoli SV, Covacci A, Pizza M, Rappuoli R, Moxon ER, Tettelin H, Medini D

Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination, Proceedings of the National Academy of Sciences of the United States of America. 2011 Feb 28

Silva JC, Furtado LF, Ferro TC, Bezerra Kde C, Borges EP, Melo AC

[Parasitism due to Ascaris lumbricoides and its epidemiological characteristics among children in the State of Maranhão], Revista da Sociedade Brasileira de Medicina Tropical. 2011 Feb 22

Dunning Hotopp JC

Horizontal gene transfer between bacteria and animals, Trends in genetics : TIG. 2011 Feb 18

Schneider MC, Aguilera XP, Barbosa da Silva Junior J, Ault SK, Najera P, Martinez J, Requejo R, Nicholls RS, Yadon Z, Silva JC, Leanes LF, Periago MR

Elimination of neglected diseases in latin america and the Caribbean: a mapping of selected diseases, PLoS neglected tropical diseases. 2011 Feb 15

Stanley-Cary C, Rinehart N, Tonge B, White O, Fielding J

Greater disruption to control of voluntary saccades in autistic disorder than Asperger's disorder: evidence for greater cerebellar involvement in autism?, Cerebellum (London, England). 2011 Feb 14

Meirelles GV, Silva JC, Mendonça Yde A, Ramos CH, Torriani IL, Kobarg J

Human Nek6 is a monomeric mostly globular kinase with an unfolded short N-terminal domain, BMC structural biology. 2011 Feb 14

Gwinn M, Grossniklaus DA, Yu W, Melillo S, Wulf A, Flome J, Dotson WD, Khoury MJ

Horizon scanning for new genomic tests, Genetics in medicine : official journal of the American College of Medical Genetics. 2011 Feb 04

Sahl JW, Lloyd AL, Redman JC, Cebula TA, Wood DP, Mobley HL, Rasko DA

Genomic characterization of asymptomatic Escherichia coli isolated from the neobladder, Microbiology (Reading, England). 2011 Jan 20

Gwinn MR, Johns DO, Bateson TF, Guyton KZ

A review of the genotoxicity of 1,2-dichloroethane (EDC), Mutation research. 2011 Jan 19

Casjens SR, Fraser-Liggett CM, Mongodin EF, Qiu WG, Dunn JJ, Luft BJ, Schutzer SE

Whole genome sequence of an unusual Borrelia burgdorferi sensu lato isolate, Journal of bacteriology. 2011 Jan 07

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Karsch Mizrachi I, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C,

Towards BioDBcore: a community-defined information specification for biological databases, Database : the journal of biological databases and curation. 2011 Jan 04