Publications

Recent publications from the lab

2019

Kim A, Popovici J, Menard D, Serre D (2019) Plasmodium vivax transcriptomes reveal stage-specific chloroquine response and differential regulation of male and female gametocytes. Nature Communications. 10(1): 371.

2018

Cannon MV, Bogale H, Rutt L, Humphrys M, Korpe P, Duggal P, Ravel J, Serre D (2018) A high-throughput sequencing assay to comprehensively detect and characterize unicellular eukaryotes and helminths from biological and environmental samples. Microbiome. 6(1):195. doi: 10.1186/s40168-018-0581-6. PMC6206884.

Roesch C, Popovici J, Bin S, Run V, Kim S, Ramboarina S, Rakotomalala E, Rakotoarison RL, Rasoloharimanana T, Andriamanantena Z, Kumar A, Guillotte-Blisnick M, Huon C, Serre D, Chitnis CE, Vigan-Womas I, Menard D (2018) Genetic diversity in two Plasmodium vivax protein ligands for reticulocyte invasion. PLoS Negl Trop Dis. 12(10):e0006555. PMC6211765.

Bascuñán P, Niño-Garcia JP, Galeano-Castañeda Y, Serre D, Correa MM (2018) Factors shaping the gut bacterial community assembly in two main Colombian malaria vectors. Microbiome. 6(1):148.

Popovici J, Pierce-Friedrich L, Kim S, Bin S, Run V, Lek D, Hor Daryl HK, Lee Soon-U L, Cannon MV, Serre D, Menard D (2018) Recrudescence, reinfection or relapse? A more rigorous framework to assess chloroquine efficacy for vivax malaria. J Infect Dis.

Popovici J, Vantaux A, Primault L, Samreth R, Piv EP, Bin S, Kim S, Lek D, Serre D, Menard D (2018) Therapeutic and Transmission-Blocking Efficacy of Dihydroartemisinin-Piperaquine and Chloroquine against Plasmodium vivax Malaria, Cambodia. Emerg Infect Dis. 24(8):1516-1519. PMC6056113.

Popovici J, Friedrich LR, Kim S, Bin S, Run V, Lek D, Cannon MV, Menard D, Serre D. Genomic Analyses Reveal the Common Occurrence and Complexity of Plasmodium vivax Relapses in Cambodia. MBio. 9(1). pii: e01888-17. PMC5784252.

2017

Chung M, Small ST, Serre D, Zimmerman PA, Dunning Hotopp JC. Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb. Pathog Dis. 75(9). PMC5827699

Cannon MV, Craine J, Hester J, Shalkhauser A, Chan ER, Logue K, Small S, Serre D. Dynamic microbial populations along the Cuyahoga River. PLoS One 12(10):e0186290. PMC5648161

Kim A, Popovici J, Vantaux A, Samreth R, Bin S, Kim S, Roesch C, Liang L, Davies H, Felgner P, Herrera S, Arévalo-Herrera M, Ménard D, Serre D. Characterization of vivax blood stage transcriptomes from field isolates reveals similarities among infections and complex gene isoforms. Sci Rep. 7(1):7761. PMC5552866

2016

Cannon MV, Pilarowski G, Liu X, Serre D. Extensive Epigenetic Changes Accompany Terminal Differentiation of Mouse Hepatocytes After Birth. G3 (Bethesda). g3.116.034785. PMC5100869

Auburn S, Serre D, Pearson RD, Amato R, Sriprawat K, To S, Handayuni I, Suwanarusk R, Russell B, Drury E, Stalker J, Miotto O, Kwiatkowski DP, Nosten F, Price RN. Genomic Analysis Reveals a Common Breakpoint in Amplifications of the Plasmodium vivax Multidrug Resistance 1 Locus in Thailand. J Infect Dis. 214(8):1235-42. PMC5034950.

Cannon MV, Hester J, Shalkhauser A, Chan ER, Logue K, Small ST and Serre D. In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River. Sci Rep. 6:22908. PMC4786790.

Small ST, Reimer LJ, Tisch DJ, King CL, Christensen BM, Siba PM, Kazura JW, Serre D and Zimmerman PA. Population genomics of the filarial nematode parasite Wuchereria bancrofti from mosquitoes. Mol Ecol. 25(7):1465-77. PMC4808423.

Friedrich LR, Popovici J, Kim S, Dysoley L, Zimmerman PA, Menard D and Serre D. Complexity of infection and genetic diversity in Cambodian Plasmodium vivax. PLoS Negl Trop Dis. 10(3):e0004526. PMC4809505.

Logue K, Keven JB, Cannon MV, Reimer L, Siba P, Walker ED, Zimmerman PA and Serre D. Unbiased Characterization of Anopheles Mosquito Blood Meals by Targeted High-Throughput Sequencing. PLoS Negl Trop Dis. 10(3):e0004512. PMC4786206.